Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g0273 ATGGGAGTCCGCGATCAAGAAACAATTGAAAGCTCGCGTTCAATAGAATTAATGGAAAACATTGAATCCGATGAACCCGAAAAGAAGAGGCCGCATTTAAGTTCAGTATCCTCTCCCATGGCGCGGAATTCAACAAACCCATCAACCAACAACAAATGTGCTGATGTGGGAGTCTTGCAGTCACAGAACCAGCAGCTTGTTCAACAGATAGACCTCCAAAAACAGGCATTGTATGACCTTGAAGTAAAGATTGGAGATTTAAAATACAGGCAAAATTCATATAATGACATGATGATTGCAGTAAACGAACTCTGGAATCAGTTGGTTGATGACCTGATCCTTCTTGGAATACGAGCTGGTGGAGGCCAAAATGTATTTAAAAATTTGGAGCACCCTAGTAATCCTCAAGATTCACTTTCTTTGTGTCCGGTGGAGGGTATCTTCCTTTCCAGATTAACACAGAAAGATCTCATTGAAGCTAACAATCATGATGAGGTCATTAATTTTGTTGAGGAAGCACTTGCTCTGCGTCAGTCATCTACCAGGGAGTTGTTGAAACTTCTTGAAGATACTATTGATGCTCAGATTGAAAGAACTTACTGTATTACCGAGGGTTTGGAGGGGTCAGTTTCAGAAGATGCTATCGTTCAGATGTCTAAAATTGATGATATGATGAAAGAGGAGGTAAACAATTTACGTGAAGTAATCAATGCTCTCCATGTCAAGCATAAAGATTATGCTGTTGCCATTGAAAATTATATTAGCTGCCACTTAGTGGATCAATCTGAGACTAAACGTTTAGCAGGTGAACTTGATGAAAGCATGGCTGAACTTGAAGAGAGTAGGAGAAAATTAGTCAATCTGAAAATGCAGAAAGATGCAGTGATAGGGATGCAGTCGCCTGGTTCAGATGCAGTTAATGGGACTTTGTCTCCTGAAAAGCCTTCAGACAAGACAATGGGTCTGCGGGAGTTGAAAGATTCAATCGAGGAAGCAAAGATAGTGGCAGCTGACCGTCTTTCAGAGCTTCAAGAAGCACAGGAAGACAATCTGACCTTGAGAGGGCATTTGCAAGATCTTCAGAATGAATTGACCGATGACAAGTATGTATATTCATCCCGACTATATTCTTTGGTAAACGATCAACTTCAACATTGGAATACTGAATTGGAGCGGTATAAAGCATTGACAGAGTCTCTGCAGGCTGAAAGGATCCATGTTATGAAATGGGAAAAGGAACTGCACTCAAAATTGGAGTCTGCAGATACTGCAAGGCTTACAGTTGACAATTCTGACTGTAGGATTGAAGAGCTAGAGCTCCAGTTGCAAAAGTGTACTATTGAAAAGAACGATATTGAAATAGAGATGGAAGAAGCTATACAGGATACCGGGAGAAAAGACATTAATTCTGAGTTTCATGTCATGGCTTCAGCCTTATCTAAGGAAATGGGTATGATGGAAGCTCAATTGAAACGATGGAAGGATGCAGCTCATGAGGCAGTTTCTTTACGTGAGAAAGCACATTCGCTAAGATCTTTGTTAAGTGGGAAGTCAAGTGAAATAAAAAGCTTAGCAAACAAATGTTCTGAGCAAACCGTGGAGATAAAGTCTTTAAAAACATTGATTGAAAGGCTGCAGAAGGAAAAGGTGGAATTACAATTCTTTTTGGACTTGCATGGGCAGGAGAATCATGAAAAAAGAGGTTTGGTAGAAATCAGAGATTCAGAAAGTAAAGCTCTCGCTCAAGCTGAAGTACTGAAAAATGCTTTAGATGAGCATGGTCTAGAGTTGAGAGTAAAAGCTGCAAATGAAGCTGAAGCTGCTTATGAACAAAGGCTTTCTGCAGCCGAAGCGGAAATAGAGGATTTAAGGGCCAAACTGGAAGCTTCTGAAAGAGATATTTTGGAGCTGACTGAGGCTATTAAAGTCAAAGATGCGGAGTCAGAGGCATATATATCTGAAATTGAGACTATTGGACAAGCATATGAAGATATGCAGACGCAGAACAAACATCTATTGCAGCAGGTGACTGAGAGGGATGACTATAATATTAAGCTTGTATCAGAAAGCGTAAAGACAAAACAGGCACACAGCATCTTACTTTCTGAGAAGCAGACCTTAGCAAAGCAGCTTCTACAAATTAACACTTCAATAGAAAGTTTAAAGATGAGGATAACACATAGTGAAGACCAGATGAAAGCTCTTTTATCAGAAGCTACTAAATCTACTCAAGAGGAAAAACACCTTGCAGTTACCCTGGAGTCTGCAAAGTGGGAATTGGCTGATGCTGAAAAGGAGTTGAAGTGGCTTAAGTCTACTGTTACTTCTTCTGAGAAAGAGTATGATCAGATTCAGAAAGACTTGGAAGTTACCCAAATTGAGTTGGATGCTGAAAGGAGTTCAAGAAAGAAGCTTGAAGAAGAACTCAAGGAATTAAACAGCAAAATTGATGAGCTGAGTTCCGAAACTGGAGAGACAGCAATACAAAAACTACAAGATGAAATTAGGGTTTGCAAGAACATGATCAAATGCACAGTCTGTTCTGATCGTCCAAAGGAGGTTGTGATTGTGAAGTGTTATCATCTGTTTTGCAATCATTGTATTCAGAGGAACTTGGAACTCCGTCATCGCAAGTGTCCTGCTTGTGGGACTGCTTTTGGTCAGAGTGATGTTCGGTTCGTGAAAATATGA 2691 0.4017 MGVRDQETIESSRSIELMENIESDEPEKKRPHLSSVSSPMARNSTNPSTNNKCADVGVLQSQNQQLVQQIDLQKQALYDLEVKIGDLKYRQNSYNDMMIAVNELWNQLVDDLILLGIRAGGGQNVFKNLEHPSNPQDSLSLCPVEGIFLSRLTQKDLIEANNHDEVINFVEEALALRQSSTRELLKLLEDTIDAQIERTYCITEGLEGSVSEDAIVQMSKIDDMMKEEVNNLREVINALHVKHKDYAVAIENYISCHLVDQSETKRLAGELDESMAELEESRRKLVNLKMQKDAVIGMQSPGSDAVNGTLSPEKPSDKTMGLRELKDSIEEAKIVAADRLSELQEAQEDNLTLRGHLQDLQNELTDDKYVYSSRLYSLVNDQLQHWNTELERYKALTESLQAERIHVMKWEKELHSKLESADTARLTVDNSDCRIEELELQLQKCTIEKNDIEIEMEEAIQDTGRKDINSEFHVMASALSKEMGMMEAQLKRWKDAAHEAVSLREKAHSLRSLLSGKSSEIKSLANKCSEQTVEIKSLKTLIERLQKEKVELQFFLDLHGQENHEKRGLVEIRDSESKALAQAEVLKNALDEHGLELRVKAANEAEAAYEQRLSAAEAEIEDLRAKLEASERDILELTEAIKVKDAESEAYISEIETIGQAYEDMQTQNKHLLQQVTERDDYNIKLVSESVKTKQAHSILLSEKQTLAKQLLQINTSIESLKMRITHSEDQMKALLSEATKSTQEEKHLAVTLESAKWELADAEKELKWLKSTVTSSEKEYDQIQKDLEVTQIELDAERSSRKKLEEELKELNSKIDELSSETGETAIQKLQDEIRVCKNMIKCTVCSDRPKEVVIVKCYHLFCNHCIQRNLELRHRKCPACGTAFGQSDVRFVKI 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g0273 896 Coils Coil 329 363 - -
Acco10g0273 896 SMART ring_2 844 882 IPR001841 -
Acco10g0273 896 MobiDBLite consensus disorder prediction 1 52 - -
Acco10g0273 896 Coils Coil 528 548 - -
Acco10g0273 896 ProSiteProfiles Zinc finger RING-type profile. 844 882 IPR001841 -
Acco10g0273 896 Coils Coil 753 822 - -
Acco10g0273 896 Coils Coil 383 403 - -
Acco10g0273 896 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 825 895 IPR013083 -
Acco10g0273 896 SUPERFAMILY RING/U-box 843 887 - -
Acco10g0273 896 MobiDBLite consensus disorder prediction 1 32 - -
Acco10g0273 896 MobiDBLite consensus disorder prediction 298 318 - -
Acco10g0273 896 Coils Coil 599 647 - -
Acco10g0273 896 Coils Coil 428 462 - -
Acco10g0273 896 CDD RING-HC_Bre1-like 836 892 - -
Acco10g0273 896 Pfam Zinc finger, C3HC4 type (RING finger) 843 885 - -
Acco10g0273 896 ProSitePatterns Zinc finger RING-type signature. 859 868 IPR017907 -
Acco10g0273 896 PANTHER RING FINGER PROTEIN-RELATED 24 896 IPR013956 GO:0004842|GO:0010390
Acco10g0273 896 MobiDBLite consensus disorder prediction 36 52 - -
Acco10g0273 896 Coils Coil 718 738 - -
Acco10g0273 896 Coils Coil 264 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g0273 Acco-ChrAcco10 7112558 7125700 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g0273 818 891 RAD5 or RAD16-like Gene Family AT5G05130 27.711 7.10e-08 54.7