Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g0268 ATGGAAGCTCCTGTGGGAAAGAAGGTGGCCAAGCATGGTAATAAGCAGTTGGAGTTGATAAGGATGGTACTGAAGAGAGAGGTTGAGAAAAGGAAGAAGAAGAAGAAGATGAAGAGGAAGGAGGAGGAAGAGGAACAAGAGGAATTGCACTACAGTGATGGAGAGTTAACAAAAGAATTACCCAATGGGTTAATGGCAATTTCTACGGCATCAACAGCCCCAGAATGCTGCAATGTAGGTTCTAAATGTGATGTTAAATTATGTGTTGATCATAAGGCAATTACTCCTCGTTACTTCAGGTCCAAGAATGTTAAGAGGCTGCCTGAGGGAAAGTTGCAGGTTTTACCGTATGGACGCAAGTTGAATGTTGAACTTCTTGCTTATTGCAATTCGTTGTGTACAGTATACTTGTCTGCATTGTATCTATGGCCATTTGAAAAGTATTTTGATACTCAAAATGAAGTTAAGATGGCATGTCCAGTTTGTCGAGGAACTTGCTCATGTAAAGACTGCTTGAAAAGTAAATGTAAAGACAACGAAACAAAGGTAAAAGACCATCTGATATTCACATCAAGCAAGTTGAATGTTGCGGCAATGACCAAACTTACTGGTAAGGCCTCTTTCGCTGATGCTTGTGGTGAAGTTTATGTGGTTTTCCGGCAATCGTGTCAAAGGAACTCCTATGAAGAAATCATTACATCTATTTCCGAGTCATCTGATGGGATGGATGCCTGCCTTGCCAGTGAAAATCATCTTTTGGATAAGAAGGCCATCACCAACGGCAATTCAGTGGCGACTTTTTCTTTGCATAAACGCACAAACTATGATGGTAATGGTGATGTATCTTGTCCACCAAAAGAACTTGGTGGTTGTGGTGATAATTTTCTCGAATTAAGATGTGTTTTTCCTTTAAGTCGGATCAAGGAGATGGAAGTAACAGCAGAAGAAATAGTTTGCAGCTATGACTTTCCTGAAACTTTGGACAAAAGTTCGAGCTGCTCACTGTGTCCAGACGCAGATAATAAACTTGATGGATTTAAGCAGTTACAAGAAGCAGCTCTTAGGGAAGATTCGAAAGACAATTGGCTGTTTTATCCCACTGTTTTGGACATTGGTGGTGATAACTTCGAACACTTTCAGAAGCACTGGGGAAAAGGCCATCCTGTAGTAGTGCGAGATGTGCTCCGAAATACATCAAACCTCAGTTGGGATCCACTGGTCATGTTTTGTACTTATCTTGAGGGTAGCATCTCAAGATATGAGAATGACAAGGATGAACTTGAAGCTTTTTTGGATTGGTGTGAGGTGGAAATTAACATTAGGCAGTGCTTTACTCGATCTCTTAAATGTCAGCCACAGAAAAACATGTGGCATGATATGCTGAAATTGAAGTGGTTATTGTCTTCCCAACTATTCAGAGAATGGTTTCCAGCTCATTTTGCTGACGTAATTGATGCTCTACCACTTCAAGAATACATGAATCCTACGTTTGGTTTTCTGAATTTAGCTATAAATCTGGCCCAGAGGAGTGCAATGCATGACCTAGGACCATATATCCATCTTTCATATAGCTGTGGTGATGAACAGAGTGACTTTGTGACAAAACTATCTTACGATTCATATGATGTGGTCAATATTATGGCTCACACGACAGATGTCCCTCTTTCTACAGAACAACTGACTAAAATAAGGAAGCTGCTGAAAAGGCACCGAAGTCTTTGTCGAAGGGATTCCTCTGAAATTAGTGTTGACCAATTAAAGGAACAGGGAGAGAAAGTAAATTCATTACCGCCTGCTGAAGATATTGAAATGACCAGTTCAAATAATGATAGAAATGGAAAGTTTATCAAACATTCTAGTGCCCAGTGGGATGTCTTTCGTAGACAAGATGTTCCAAAACCCTTAGAATACCTTAAAAGACACTCTGCTGAATTTTCTCCTTCCCATGACAATCACAAGCAGGCGGATCATCCACTTTTAGATCAGAGCTTCTTTCTTGACAACACTCACAAGATGGGGCTCAAGGAGGAATATAAAATTGAACCATGGACTTTTGAGCAACATGTCGGCGAAGCTGTCATAATTCCTGCCGGAGCCCTTACCAGATTAGAAATTCTAAGAATCTTAAAGGAGTGTTGTGTTCATGTTGTATTGGAATTTGTTTCCCCTGGGAATGTTGCCGAGTGTATCCAATTGATTGATGAAGCCCGTCAGCTTCCAGAAGACCACAAAGCAAATGTTGACCATCTTGAGGTGAAGAAAATGGCTCTTTATAGCATCGATTCTGCAATTAAAGAGATACGTGAACTTACCTCCAAAACGTGA 2325 0.4052 MEAPVGKKVAKHGNKQLELIRMVLKREVEKRKKKKKMKRKEEEEEQEELHYSDGELTKELPNGLMAISTASTAPECCNVGSKCDVKLCVDHKAITPRYFRSKNVKRLPEGKLQVLPYGRKLNVELLAYCNSLCTVYLSALYLWPFEKYFDTQNEVKMACPVCRGTCSCKDCLKSKCKDNETKVKDHLIFTSSKLNVAAMTKLTGKASFADACGEVYVVFRQSCQRNSYEEIITSISESSDGMDACLASENHLLDKKAITNGNSVATFSLHKRTNYDGNGDVSCPPKELGGCGDNFLELRCVFPLSRIKEMEVTAEEIVCSYDFPETLDKSSSCSLCPDADNKLDGFKQLQEAALREDSKDNWLFYPTVLDIGGDNFEHFQKHWGKGHPVVVRDVLRNTSNLSWDPLVMFCTYLEGSISRYENDKDELEAFLDWCEVEINIRQCFTRSLKCQPQKNMWHDMLKLKWLLSSQLFREWFPAHFADVIDALPLQEYMNPTFGFLNLAINLAQRSAMHDLGPYIHLSYSCGDEQSDFVTKLSYDSYDVVNIMAHTTDVPLSTEQLTKIRKLLKRHRSLCRRDSSEISVDQLKEQGEKVNSLPPAEDIEMTSSNNDRNGKFIKHSSAQWDVFRRQDVPKPLEYLKRHSAEFSPSHDNHKQADHPLLDQSFFLDNTHKMGLKEEYKIEPWTFEQHVGEAVIIPAGALTRLEILRILKECCVHVVLEFVSPGNVAECIQLIDEARQLPEDHKANVDHLEVKKMALYSIDSAIKEIRELTSKT 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g0268 774 Pfam JmjC domain, hydroxylase 619 699 IPR003347 -
Acco10g0268 774 ProSiteProfiles JmjC domain profile. 491 737 IPR003347 -
Acco10g0268 774 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 238 773 IPR045109 GO:0032454|GO:0033169
Acco10g0268 774 MobiDBLite consensus disorder prediction 600 614 - -
Acco10g0268 774 MobiDBLite consensus disorder prediction 584 614 - -
Acco10g0268 774 MobiDBLite consensus disorder prediction 30 52 - -
Acco10g0268 774 SMART cupin_9 476 737 IPR003347 -
Acco10g0268 774 SUPERFAMILY Clavaminate synthase-like 375 761 - -
Acco10g0268 774 Coils Coil 24 50 - -
Acco10g0268 774 Gene3D Cupin 368 746 - -
Acco10g0268 774 MobiDBLite consensus disorder prediction 38 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g0268 Acco-ChrAcco10 6944734 6952014 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Acco10g0268 JmjC 1.4e-06 CL0029