LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco10g0228	ATGTTGAATCCTAAGGATCAGTGTCCTAATGCGGTCTATTCGCCCCTTCGGAATCACACTGCGAGTGCCGCTGAACCAGATGGACAATCCTCAATCAGAAGCCCGAAGTCTTACCCACCCGCGAACTCTCTATATGAGGACCTTGTTAGCAGTTCGGATCTTTTCTGGAGAAACCTTCAGGACTTTCACAAATCCTTGGGCACCAAATTAAAAGTTCCTGCTGTTGGAGGAAACCCAATAGATCTATATCACCTTTTTATTGAAGTCACTTCTCGTGGTGGGCTTGAAAAGGTAATTGGAGATCGTAAATGGAAGGATGTGATTACTGTCTTCAAATTCCCAAACACCGTAACCAGCGCATCATTTGCATTGCGCAAATACTATCAATCATTGCTTTATGACTTTGAGCAGGTTTATTATTTTCGGAAGCAAGTCCCTTCTAATGCAGTTCCTGATTCTGGCAGCAGGAGCATGTTGAGCTCGAATGAAGGGGCTGCTTTGAATGATTTACCAGTTAGTACGCTTGAGCAGCAGCTCGGCTCTTTGGTGCCTGGTACTATCGACTTGAAATTTGATGGTGGATATGTAGTCACTGTGAATCTGGGTTCTGACCAGCTGAAAGGTGTGCTGTATCATGTGCCTCACAATGCATCCCTGAGTTCTGCATCCATACCTGTTTCTCAGATTCGAAAGAGATCAAAGTTGGGTTCACAGGATCCATCTCGGCCCAAATCAAACAGGAGTGGCTACAATTTCTTCTTTGCAGAACACTATGCCAGGCTAAAGCCTTCATATTATGGACAAGAGAGAGCAATTAGTAAGAAGATTGGATTCTTATGGAACCATCTCACTGAAGCAGAAAGACAGATTTATCAGGAGAAAGGAAGGAGAGATAAGGAGAGATACAGGAATGAAATGGAGGAATACAAAGCATCCAATAATGTGACTCCTCAGTAG	957	0.4378	MLNPKDQCPNAVYSPLRNHTASAAEPDGQSSIRSPKSYPPANSLYEDLVSSSDLFWRNLQDFHKSLGTKLKVPAVGGNPIDLYHLFIEVTSRGGLEKVIGDRKWKDVITVFKFPNTVTSASFALRKYYQSLLYDFEQVYYFRKQVPSNAVPDSGSRSMLSSNEGAALNDLPVSTLEQQLGSLVPGTIDLKFDGGYVVTVNLGSDQLKGVLYHVPHNASLSSASIPVSQIRKRSKLGSQDPSRPKSNRSGYNFFFAEHYARLKPSYYGQERAISKKIGFLWNHLTEAERQIYQEKGRRDKERYRNEMEEYKASNNVTPQ	318

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco10g0228	318	Pfam	HMG (high mobility group) box	243	310	IPR009071	-
	Acco10g0228	318	SMART	ARID_2	46	136	-	-
	Acco10g0228	318	MobiDBLite	consensus disorder prediction	294	308	-	-
	Acco10g0228	318	CDD	ARID_HMGB9-like	51	136	IPR045303	GO:0003677
	Acco10g0228	318	ProSiteProfiles	HMG boxes A and B DNA-binding domains profile.	243	310	IPR009071	-
	Acco10g0228	318	MobiDBLite	consensus disorder prediction	294	318	-	-
	Acco10g0228	318	SMART	bright_3	50	141	IPR001606	GO:0003677
	Acco10g0228	318	PANTHER	HIGH MOBILITY GROUP B PROTEIN 9	31	313	-	-
	Acco10g0228	318	MobiDBLite	consensus disorder prediction	13	36	-	-
	Acco10g0228	318	Pfam	ARID/BRIGHT DNA binding domain	53	136	IPR001606	GO:0003677
	Acco10g0228	318	CDD	HMG-box_AtHMGB9-like	243	309	-	-
	Acco10g0228	318	Coils	Coil	292	312	-	-
	Acco10g0228	318	MobiDBLite	consensus disorder prediction	1	36	-	-
	Acco10g0228	318	Gene3D	-	37	154	IPR036431	GO:0003677
	Acco10g0228	318	ProSiteProfiles	ARID domain profile.	49	140	IPR001606	GO:0003677
	Acco10g0228	318	SMART	hmgende2	242	311	IPR009071	-
	Acco10g0228	318	SUPERFAMILY	ARID-like	50	146	IPR036431	GO:0003677
	Acco10g0228	318	Gene3D	High mobility group box domain	227	317	IPR036910	-
	Acco10g0228	318	SUPERFAMILY	HMG-box	237	312	IPR036910	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco10g0228	Acco-ChrAcco10	5505845	5512883	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco10g0228	26	314	ARID Transcription Factor Family	AT3G13350	50.485	4.94e-97	288

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	ARID	Acco10g0228		ARID	1.2e-19	CL0123