Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g0226 ATGGGCTCCAGGAAGGGTGACAGCACTCACTCTGGCGATGGTGCCAGTCCTGGCAAAATCTTCATTGGAGGGCTAGCTAGAGATACAACACTTGAACAATTCGTCAAGTATTTTGAGAAGTATGGGGAGATAACAGACTCGGTCATAATGAAAGATCGGCATACGGGTCGACCTAGGGGTTTTGGTTTCATTACCTACGCAGATCCTTCTGTTGTTGACCATGTTATTCAGGAGAACCATGTGATCAATGGCAAGCAGGTGGAGATCAAAAGGACAATTCCAAAGGGCTCATCACAAGCTAATGATTTTAAAACTAAGAAGATATTTGTTGGTGGTATTCCGACCTCAGTAAGCGAAGATGAATTGAAGAACTTCTTTTCAAAGTATGGAAAGGTTGTGGAGCATGAGATCATTCGTGATCATACTACTAAACGCTCTCGAGGATTTGGATTTATAGTCTTTGACAGTGAAAAAGTTGTTGATAATTTGCTGGCAAATGGAAACATGATTGATATGGCTGGTACTCAGGTTGAGATCAAGAAGGCTGAACCCAAGAAAGCCTCAAACCCACCATCTTTTCCTCCATTTGGTAGTGATAGGGCACGCCCATACAGTGATGGTTATGGTGGATTTGGTGAATCCTATAGCAGTTTTGGCAGTGGCAGTTTTGGTCCTGCTTCTTATAGGTCACTTGGAGGTTTTGGCAGCAGGCTTGGTGATTATGGTGGGTATGGTGGTGACGAATTTGGTGATAGTTTTGGAGGCTATGGTGGTGGTGGTGGTGGTTTTGCTGGCTATCGAGGTGATTCATCATTTGGCTATTCTAGTCGCTATGGTTCATATATGGGGGGCCTTGGTGGTGGATATGGTGGAAGTGGACTAGGGGCATATGGGCGAGGCGCTGGGGGCTTTGCAAGCTATGGTGGACCTGGTTCTGGTGGGGGTTATGACTCTGGCCCTGGTGCTGGCTATGCTGGGCCAGGGGCACTGTATGGTAGTAGAGGAGGTTATGGAGGTAGTAGTCGTTACCACCCTTATGCAAGATAG 1047 0.4642 MGSRKGDSTHSGDGASPGKIFIGGLARDTTLEQFVKYFEKYGEITDSVIMKDRHTGRPRGFGFITYADPSVVDHVIQENHVINGKQVEIKRTIPKGSSQANDFKTKKIFVGGIPTSVSEDELKNFFSKYGKVVEHEIIRDHTTKRSRGFGFIVFDSEKVVDNLLANGNMIDMAGTQVEIKKAEPKKASNPPSFPPFGSDRARPYSDGYGGFGESYSSFGSGSFGPASYRSLGGFGSRLGDYGGYGGDEFGDSFGGYGGGGGGFAGYRGDSSFGYSSRYGSYMGGLGGGYGGSGLGAYGRGAGGFASYGGPGSGGGYDSGPGAGYAGPGALYGSRGGYGGSSRYHPYAR 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g0226 348 FunFam Heterogeneous nuclear ribonucleoprotein 1 99 223 - -
Acco10g0226 348 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 168 IPR000504 GO:0003723
Acco10g0226 348 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 86 IPR000504 GO:0003723
Acco10g0226 348 Gene3D - 98 224 IPR012677 -
Acco10g0226 348 FunFam Heterogeneous nuclear ribonucleoprotein 1 17 98 - -
Acco10g0226 348 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Acco10g0226 348 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Acco10g0226 348 SMART rrm1_1 19 90 IPR000504 GO:0003723
Acco10g0226 348 SMART rrm1_1 107 180 IPR000504 GO:0003723
Acco10g0226 348 Gene3D - 18 97 IPR012677 -
Acco10g0226 348 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 5 348 - -
Acco10g0226 348 SUPERFAMILY RNA-binding domain, RBD 102 213 IPR035979 GO:0003676
Acco10g0226 348 SUPERFAMILY RNA-binding domain, RBD 11 98 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g0226 Acco-ChrAcco10 5476308 5478252 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g0226 4 170 Eukaryotic Initiation Factors Gene Family AT1G71770 26.455 9.00e-14 70.5