Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g0192 ATGGGACGCTCTTGCGCTGCTGCGCGCCAGCCTGACGATGACCCCAGCCAAAGATCCAGGAGGAGAAAGGCAGCTTTCAATGCAGAGAATTCAGAAGTTTTAATTATAGGCCATGGAATAAATGAGGGGACAGTATCTCTTTACCACTGTAATTATTGCAACAAAGATATTTCCAGGAAGATCCGCATTAAGTGTGCTGTTTGTCAAGATTTTGATCTCTGCATAGAGTGCTTCTCGGTTGGAGCTGAGGTGACACCTCACAAAGGCAATCACCCATATAGGGTTATGGATAATCTATCTTTTCCGTTGCTATGTCCAGACTGGAATGCAGATGAAGAGATGCTGCTTCTAGATGGCATTGCAATGTATGGATTTGGCAATTGGACTGAAGTAGCAGGATGTGTTGGAACAAAAAGCAAGTCAGAGTGTATTGGCCACTATAATGCTTTTTACATGAATTCACTGTGCTTTCCTCTCCCTGATTTGTCTCGTGTTATGGGAAAGAGTAGAGAGGAGCTCCTTGCCATGGCCAAAGAGTTTGGTGATGTTAAGAAAGAACTTTCTCCAAATGCAGAGCTCACACTGAAAGAAGAGCCTCACTTTTCTGCGGGAATAAACTCAGAGGAATCTAAAATGGAAGAACCCGCTAATCAAACATTGTCTAGCTTAACTTCAGGTGCTAATATGGGCACAGTTCCTACCAAAGCTTATTCAAGTTCTTTTAAGAAGGCTTCCAATGCTAACCGGATTAACAACAGACTTAAAATGGAAGTGGAGACTCAAGCAGAGCGAAGCATTGGAGAAAAAAAACCTAAGTTATCAGGGGAAGATGGACCTTCTGTGATGGAGTTGAGTGGATACAATTTTAAGAGAGAAGAATTTGAGATTGAATATGACAATGATGCAGAACAAGTATTAGCAGATATGGAATTTAAGGACTCTGATACTGAATCTGAACGTTCGTTGAAACTACATGTGCTCCAAATATATTCAAAAAGGTTAGATGAAAGAAAGCGGAGAAAGGATTTTATCCTTGAAAGAAATTTGCTTTATGCTGACCCTTTTGAGAAATCTCTTACACCTGAAGAGAAACAAATGTGTCAGCACTGTAGGGTCTTCATGCGGTTTCACTCTGAAGAAGAGCACAAGGAGTTTCTCAAAAGTAGTATTGAAGAACATCGTATTGTTAAGAGAATAAAAGATCTCCAGGAAGCTCGAGCTGCTGGTTGTCGACTGTCTGCCGATGCATATAGATTTATTGATCTCAAGAGGGCAGCTGAACAAAGTGCCCCTGCTGCGTTACAGGCATTCTCAAGGTCCTTAGATGATTGGGATGTCTCTGGAATTACGGGGGCCAAGTTACTATCACAATCTGAGAAAGAGCTGTGTGATGAGATAAGAATTCTTCCGTCACACTATCTCAACATGTTGCAGATCATGACACAGGAAATTTCTAGGGGTAGTGTGACCAAGAAATCTGATGCATATATCTTGTTCAATGTAGAACCCGGCAAGGTTGATAGAGTTTATGATGTGCTTGTGAAAAAGGGGATTGCGCCAACTTGA 1566 0.4163 MGRSCAAARQPDDDPSQRSRRRKAAFNAENSEVLIIGHGINEGTVSLYHCNYCNKDISRKIRIKCAVCQDFDLCIECFSVGAEVTPHKGNHPYRVMDNLSFPLLCPDWNADEEMLLLDGIAMYGFGNWTEVAGCVGTKSKSECIGHYNAFYMNSLCFPLPDLSRVMGKSREELLAMAKEFGDVKKELSPNAELTLKEEPHFSAGINSEESKMEEPANQTLSSLTSGANMGTVPTKAYSSSFKKASNANRINNRLKMEVETQAERSIGEKKPKLSGEDGPSVMELSGYNFKREEFEIEYDNDAEQVLADMEFKDSDTESERSLKLHVLQIYSKRLDERKRRKDFILERNLLYADPFEKSLTPEEKQMCQHCRVFMRFHSEEEHKEFLKSSIEEHRIVKRIKDLQEARAAGCRLSADAYRFIDLKRAAEQSAPAALQAFSRSLDDWDVSGITGAKLLSQSEKELCDEIRILPSHYLNMLQIMTQEISRGSVTKKSDAYILFNVEPGKVDRVYDVLVKKGIAPT 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g0192 521 SMART zz_5 44 88 IPR000433 GO:0008270
Acco10g0192 521 SMART sant 104 153 IPR001005 -
Acco10g0192 521 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Acco10g0192 521 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Acco10g0192 521 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Acco10g0192 521 SUPERFAMILY RING/U-box 41 111 - -
Acco10g0192 521 FunFam Transcriptional adapter 2 101 153 - -
Acco10g0192 521 Pfam Zinc finger, ZZ type 48 82 IPR000433 GO:0008270
Acco10g0192 521 SUPERFAMILY Homeodomain-like 101 155 IPR009057 -
Acco10g0192 521 CDD ZZ_ADA2 48 96 IPR041983 -
Acco10g0192 521 Gene3D - 43 96 IPR043145 -
Acco10g0192 521 Gene3D - 103 153 - -
Acco10g0192 521 MobiDBLite consensus disorder prediction 261 276 - -
Acco10g0192 521 Gene3D - 436 519 IPR036388 -
Acco10g0192 521 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Acco10g0192 521 MobiDBLite consensus disorder prediction 1 22 - -
Acco10g0192 521 Pfam Myb-like DNA-binding domain 107 148 IPR001005 -
Acco10g0192 521 MobiDBLite consensus disorder prediction 261 280 - -
Acco10g0192 521 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 48 516 - -
Acco10g0192 521 FunFam Transcriptional adapter 41 96 - -
Acco10g0192 521 PIRSF Txn_adaptor_ADA2 37 436 IPR016827 GO:0003713|GO:0006357|GO:0035065
Acco10g0192 521 PIRSF Txn_adaptor_ADA2 429 520 IPR016827 GO:0003713|GO:0006357|GO:0035065
Acco10g0192 521 FunFam Transcriptional adapter 2 436 520 - -
Acco10g0192 521 SUPERFAMILY Homeodomain-like 438 518 IPR009057 -
Acco10g0192 521 CDD SANT 108 148 IPR001005 -
Acco10g0192 521 ProSiteProfiles SWIRM domain profile. 435 521 IPR007526 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g0192 Acco-ChrAcco10 4435804 4476580 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g0192 1 519 EF-hand Containing Proteins AT3G07740 51.494 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Acco10g0192 Myb_DNA-binding 1.1e-08 CL0123