Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g0163 ATGGGTGGGAGAAACTATCTATTCATTTTAAATTCACAAGCCTTTGTTTCGGAAAATGCAGTAACATTAGGAAATGAAGAGGAAGGAGAGGACCAGGAGTTTGGGACTTGGCTGAGCACTTCAAGTCCCAGAACCATGAATGACGCTTTGGTTGTTTTAACATTAGGAAATGAAGAGGAAGGAGAGGACCAGGAGTTTGGGACTTGGCTGAGCACTTCAAGTCCCAGAACCATGAATGACGCTTTGGTTGTTTGTGGGGAATCAGGAACAATATCACAGGCATTAATGATGCGAAGGGAATTAATTTACCCCACGAAAAATGAAGGCGAAATGAGATTCAGAAACGCCATGAGAAGAGGCAGAGAGCTTCTTCAACTCTATTCTTCACTTCGCTGTGGAACTTCGAAATCACCATCTTCTGCTTCTGCTTCTCGTCGGCTTATTATTCCCTTCAGTTCTTCTTTCTCTTCAAACCCTTGTAATGAGGACGATAAGAGATCGCCCAAGTCTCAAAGGGATTCGATGCTTCTAGAAAAATTTAAACTCAGAAAACTCAAAGGTTCTTCTACATCTTCACAAAGTAGCCCCCAAGCATCATGTTCAACTTCAGAGAAGGTAGTCGAAAAGGATTTGAAGAATGAGGATGAATCCTCTAAGGTAGTGAACAATTTTAGGGAGTTAGGTTTGTGTGAGGAGCTTAATAAGGTTCTGGAGAAAATAGGGCTTCTTGTTCCTACTGAGATTCAATGTGTAGGAATTCCTGCTGTTTTGGATGGGAAAAGTATGTTGATAAGCTCAGTCTCTGGGCCTGATAGGATTTTGGCCTACTTGTTGCCCCTTATACAGCTTTTGAGACAAGATATGGAGTTGTCCCATTCAAATTTGCGGCATCCTCGGGCCATTGTGCTTTGTGCCACAGAGGAGAAAGCTGAACAGTGCTTTAATGCTGCAAAATATATCATCCATCAAGCAGAACTAAAATCTACAAAGGATGATTCGCCAAATACTGAGAAGTCAGATGTTTCAATTGGCCTTGTAATCGGACCTCCCAGTGAGATTCTTCAGTACATTGAAGAGGGAACAGTTATTCCAGAAGAAATAAGATATTTGGTAGTGGATGATGCAGAGTGCATGTTTGATAGTGGCCTTGGCCTCGAAGTTCGCCAGATTCTCAGACACTTACCAGACTATACTTCAGAGTTAACTAACAAAGGATTGCAAACTGTTTTGGTTGCTTCAACAATAACAGAGGTGTTGGGTAAAGAGTCTCCCGTTATAAAGCGCCTGGAGGATAATCATGCTGGACATGTCTCTGCAATGTTGTTAGAAATGGATGGTGCAGAAGTCTTTCAACTCACAGAATCCTTAGATGCTTTAAGGCAAAAGATGACAGAGGCCATGAATTCCTTTCTTAAATGA 1419 0.4179 MGGRNYLFILNSQAFVSENAVTLGNEEEGEDQEFGTWLSTSSPRTMNDALVVLTLGNEEEGEDQEFGTWLSTSSPRTMNDALVVCGESGTISQALMMRRELIYPTKNEGEMRFRNAMRRGRELLQLYSSLRCGTSKSPSSASASRRLIIPFSSSFSSNPCNEDDKRSPKSQRDSMLLEKFKLRKLKGSSTSSQSSPQASCSTSEKVVEKDLKNEDESSKVVNNFRELGLCEELNKVLEKIGLLVPTEIQCVGIPAVLDGKSMLISSVSGPDRILAYLLPLIQLLRQDMELSHSNLRHPRAIVLCATEEKAEQCFNAAKYIIHQAELKSTKDDSPNTEKSDVSIGLVIGPPSEILQYIEEGTVIPEEIRYLVVDDAECMFDSGLGLEVRQILRHLPDYTSELTNKGLQTVLVASTITEVLGKESPVIKRLEDNHAGHVSAMLLEMDGAEVFQLTESLDALRQKMTEAMNSFLK 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g0163 472 Pfam Poly-adenylate binding protein, unique domain 424 468 IPR002004 GO:0003723
Acco10g0163 472 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 158 417 - -
Acco10g0163 472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 418 IPR027417 -
Acco10g0163 472 SMART poly_2 411 470 IPR002004 GO:0003723
Acco10g0163 472 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 222 250 IPR014014 GO:0003724
Acco10g0163 472 Pfam DEAD/DEAH box helicase 246 416 IPR011545 GO:0003676|GO:0005524
Acco10g0163 472 SUPERFAMILY PABC (PABP) domain 424 468 IPR036053 GO:0003723
Acco10g0163 472 MobiDBLite consensus disorder prediction 184 212 - -
Acco10g0163 472 Gene3D - 425 471 - -
Acco10g0163 472 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 253 433 IPR014001 -
Acco10g0163 472 MobiDBLite consensus disorder prediction 186 204 - -
Acco10g0163 472 Gene3D - 183 424 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g0163 416 468 Eukaryotic Initiation Factors Gene Family AT1G22760 44.444 2.29e-06 48.1