Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco1000489g0013 ATGGGCGCCTTCGGCCTGGCCCAGTCGCTGGGCATCGAGCAGAAGGCGGCCAAGGACTACATCGACCGCTATTTCACCCGCTTTGCCGGTGTCCGCACTTACATGGACGACACCAAGCAGTTTGCCAAGGCCAAGGGCTATGTCGAAACCGTCTTCGGTCGGCGCCTGTGGCTGCCCGAGATCAACTCCGGCAACGGTCCGCGCCGCAGCGGCGCCGAGCGCCAGGCGATCAACGCCCCGATGCAGGGCACGGCGGCCGACCTGATCAAGCTGGCGATGATCGCGGTGCAACAGGCGCTGGATGAGCAGAAGAAGCGCACCCGCATCGTCATGCAGGTGCACGACGAACTGGTCTTCGAAGTGCCGGAGGACGAGCTGGACTGGGTCAAGTCCGAGGTGCCGACGCTGATGGCCGGTGTGGCCGCCCTCAAGGTGCCCCTGCTCGCCGAGCGGCCTGGCCCTGGTGCATGTGGACGACGCCGCCAAGCTCTTCCGCACCGGCGGCCCCAGCGGCGTGCAGCTCAAGCTGACCGACGTGCAGCAAGCCCGCGCCGTCGGCCAGGAACTGCAGCAGCGCTTTTCCCGCGACATCCTGGTCCGCGACTGGACCCGCACGAATGCCAACTGGTTCGATGCGGTGCAGGTCGAAAAGCGCCTGATGGGCATCATCCTCACCCTGATCGTGGCGGTGGCGGCCTTCAACCTGGTCTCCACCCTGGTGATGACGGTGACCGACAAACAGGCCGACATCGCCATCCTGCGCACCCTGGGCGCCAGCCCCAAGTCGGTGATGGGCGTCTTCATGATCCAGGGCGCGCTCGCCGGCGTGATGGGCACCCTGTCCGGCCTCGGCCTGGGCCTGCTGGTGGCGCACAACCTGGACGTGATCGTGCCCTTCATCGAACGGGTGCTGCACACCACTTTCCTGCCGGCCAGCATCTACCTGATCAGCCACATGCCCAGCGACCCGCAATGGGGCGACATCATCCCCGTGACCGTGACCTCCCTGATCCTGTCCTTTGTGGCGACGCTGTCTTCCAGGGCGTGGACATCACGGTGCAGGCCGGCGAGACCATGGCCGTGCTGGGCGCCTCCGGCTCCGGCAAGAGCACGCTGCTGCACATCCTGGGCGGACTGGACAAACCCAGCACCGGCCGGGTGATGCTGATGGGGCGTGAGCTCTCGACACTGGGCGAAGCCGCCCGGGGGCAATGGCGCAACCAGCATCTGGGCTTCATCTACCAGTTCCACCATCTGCTGCCGGAATTCAGCGCGCTGGACAACGTCGCCATGCCGCTGCGCATCCGCCGCGTGCCGGTGGAGCAGGCGAGGGCGCAGGCCCAGTCGGTGCTGGCGCGGGTGGGATTGGCCGCTCGCGCGGCACACCGCCCTGGCGAACTGTCGGGCGGCGAACGGCAACGGGTGGCGATCGCGCGGGCGCTGGTCACCCGTCCGGCCTGCGTGCTGGCCGATGAGCCGACCGGCAATCTGGACCGCACGACGGCCGGCACCGTCTTCGACCTGATGCTGGAACTCGCGCGGGAGCAGGGCACGGCTTTTGTCATGGTCACTCACGACCAGGACCTGGCGGCCCGATGCCAGCATCAGCGTCGGCTGGTCGGCGGGACGCTGCAGATCCTGGGCTGA 1647 0.6764 MGAFGLAQSLGIEQKAAKDYIDRYFTRFAGVRTYMDDTKQFAKAKGYVETVFGRRLWLPEINSGNGPRRSGAERQAINAPMQGTAADLIKLAMIAVQQALDEQKKRTRIVMQVHDELVFEVPEDELDWVKSEVPTLMAGVAALKVPLLAERPGPGACGRRRQALPHRRPQRRAAQADRRAASPRRRPGTAAALFPRHPGPRLDPHECQLVRCGAGRKAPDGHHPHPDRGGGGLQPGLHPGDDGDRQTGRHRHPAHPGRQPQVGDGRLHDPGRARRRDGHPVRPRPGPAGGAQPGRDRALHRTGAAHHFPAGQHLPDQPHAQRPAMGRHHPRDRDLPDPVLCGDAVFQGVDITVQAGETMAVLGASGSGKSTLLHILGGLDKPSTGRVMLMGRELSTLGEAARGQWRNQHLGFIYQFHHLLPEFSALDNVAMPLRIRRVPVEQARAQAQSVLARVGLAARAAHRPGELSGGERQRVAIARALVTRPACVLADEPTGNLDRTTAGTVFDLMLELAREQGTAFVMVTHDQDLAARCQHQRRLVGGTLQILG 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco1000489g0013 548 Gene3D - 1 53 - -
Acco1000489g0013 548 Pfam DNA polymerase family A 1 149 IPR001098 GO:0003677|GO:0003887|GO:0006260
Acco1000489g0013 548 MobiDBLite consensus disorder prediction 170 184 - -
Acco1000489g0013 548 SUPERFAMILY DNA/RNA polymerases 1 150 IPR043502 -
Acco1000489g0013 548 PANTHER LIPOPROTEIN-RELEASING SYSTEM ATP-BINDING PROTEIN LOLD 344 541 - -
Acco1000489g0013 548 MobiDBLite consensus disorder prediction 150 337 - -
Acco1000489g0013 548 SMART polaultra3 1 125 IPR001098 GO:0003677|GO:0003887|GO:0006260
Acco1000489g0013 548 MobiDBLite consensus disorder prediction 322 337 - -
Acco1000489g0013 548 Gene3D - 54 151 - -
Acco1000489g0013 548 CDD ABC_MJ0796_LolCDE_FtsE 347 544 IPR017911 -
Acco1000489g0013 548 PRINTS DNA-polymerase family A (pol I) signature 46 57 IPR002298 GO:0003887|GO:0006261
Acco1000489g0013 548 PRINTS DNA-polymerase family A (pol I) signature 78 94 IPR002298 GO:0003887|GO:0006261
Acco1000489g0013 548 PRINTS DNA-polymerase family A (pol I) signature 108 121 IPR002298 GO:0003887|GO:0006261
Acco1000489g0013 548 PRINTS DNA-polymerase family A (pol I) signature 24 35 IPR002298 GO:0003887|GO:0006261
Acco1000489g0013 548 MobiDBLite consensus disorder prediction 265 282 - -
Acco1000489g0013 548 Gene3D - 341 545 IPR027417 -
Acco1000489g0013 548 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 330 548 IPR003439 GO:0005524
Acco1000489g0013 548 SMART AAA_5 355 541 IPR003593 GO:0016887
Acco1000489g0013 548 Pfam ABC transporter 347 494 IPR003439 GO:0005524
Acco1000489g0013 548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 345 543 IPR027417 -
Acco1000489g0013 548 ProSitePatterns ABC transporters family signature. 467 481 IPR017871 GO:0005524|GO:0016887
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco1000489g0013 345 505 Calmodulin-binding Proteins AT2G36910 34.132 9.85e-18 85.5