Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco1000480g0007 ATGGAGGAGCGGTTCGATCCCTCTCTGCCGCATGCCGCGATCAATCGCGATGCCTTGCTCCAGATATTGATCAACCTCCTCAAGAACGCCGCGGAGGCAGACGCGCACCGTCGCCGATCCCCGCATCGTCATCACCACCGCCTATCGCCACGGCATGTCGATGACGACCCTGCGCCTCCTGCTGCCACGGGCCGCTCAGTGAGCCGCGTTCTGGTCGTCGACGACGACGCTGCGATCCGCACCGTCGTCGCCCAGGCGCTGCGACGCGCCGGACACGACGTCCAGAACGGCGGAGACTTTGTCGCAGGCCGATCGTGCGCTGGCGCAGCGGCTCCGGACGTGCTGATCACCGACGTCGTACTGCCGGACGGCGACGGCATCGTTCATGTGGCGGAGGTCAATGCGCGCCACCCCCGATCTGCCGATCATCATCCTGTCGGCACAGAATACGCTGACGACGGCGGTGCGCGCGAACGAGGTTGGCGCGTACGAGTATCTCCCCAAGCCTTTCGATCTCGACGATCTCACCCGCGCGCCGTCGCCGGTGCGCTGGTCCGCCACGCGGAAATGCCGCCGCAAGGGGAGGGGGAGGACCCCGCGCTTCCCCTGATCGGCCGCTCGCCAAGCGATGCAGGACGTCTACCGGGTCATCGCCCGTGTCGTCGCGACGGACCTGACCGTGCTGATTTCGGGCGAATCGGGCACGGTAAGGAACTGGTCGCGCGTGCGATCCACGATCTCGGGCGACGCCGGGGCGCGCCATTCGTCGCGATCAACATGGCCGCGATCCCGCGCGAGCTGATCGAGGCGGAGTTGTTCGGCCACGAACGTGGCGCCTTCACTGGGGCTGGCCAGCGCAACGCCGGCCGCTTCGAACAGGCCGCGGGCGGCACCCTGTTCCCTCGACGAGATCGGCGACATGCCGATGGACGCGCAGACGCGCCTCCTTCGGGTCCTCCAGTCGGGCGAGTTCACCACGACCTGTTTTACCGCTTGAACGTCGTCCCGATCGTGCTGCCCGCGCTGCGTGACCGGCGACAGGACATTCCGTTGCTCGCCCGCCACTTCCTCGACAGCGCTGTCGCCCAGGGTTTGCCGCGCCGCCAGTTACAGCCGGAGGCGGAAGCCGCGCTCGCGGCCTATGACTGGCCGGGCAACGTCCGCGAGCTCGAAAATCTGATGCGGCGGCTCGCGGTGCTGGCGCGGGATGAGCTGATCGATCCGGCAACGATCCGCGACATGATCGGTGTGCCGGGCGCCCAGATGGACTTGCCCGACGCGGGAATTGCCGAGGCGGTGCGTCACCTGATCGAACGCATCGCCCGTGAGCGCCCCGGCGCTCTGGCACACGCGGCGCTATATTATCGCGTCATCGGAGAGGTGGAACGCCCCTTGATCGAAGCGATGCTGGCCCGACACGGCGGCAATCAGCTACGCGCGGCGCGGGCGATGGGTCTCAACCGCAATACGCTGCGCAAGCGATTAGATACGCTGGGAATTAGCGCCAAGGGCGACGATTGA 1521 0.6726 MEERFDPSLPHAAINRDALLQILINLLKNAAEADAHRRRSPHRHHHRLSPRHVDDDPAPPAATGRSVSRVLVVDDDAAIRTVVAQALRRAGHDVQNGGDFVAGRSCAGAAAPDVLITDVVLPDGDGIVHVAEVNARHPRSADHHPVGTEYADDGGARERGWRVRVSPQAFRSRRSHPRAVAGALVRHAEMPPQGEGEDPALPLIGRSPSDAGRLPGHRPCRRDGPDRADFGRIGHGKELVARAIHDLGRRRGAPFVAINMAAIPRELIEAELFGHERGAFTGAGQRNAGRFEQAAGGTLFPRRDRRHADGRADAPPSGPPVGRVHHDLFYRLNVVPIVLPALRDRRQDIPLLARHFLDSAVAQGLPRRQLQPEAEAALAAYDWPGNVRELENLMRRLAVLARDELIDPATIRDMIGVPGAQMDLPDAGIAEAVRHLIERIARERPGALAHAALYYRVIGEVERPLIEAMLARHGGNQLRAARAMGLNRNTLRKRLDTLGISAKGDD 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco1000480g0007 506 MobiDBLite consensus disorder prediction 190 231 - -
Acco1000480g0007 506 SUPERFAMILY Homeodomain-like 383 500 IPR009057 -
Acco1000480g0007 506 Gene3D - 68 146 - -
Acco1000480g0007 506 MobiDBLite consensus disorder prediction 138 159 - -
Acco1000480g0007 506 Pfam Response regulator receiver domain 70 138 IPR001789 GO:0000160
Acco1000480g0007 506 ProSitePatterns Sigma-54 interaction domain C-terminal part signature. 383 392 IPR025944 -
Acco1000480g0007 506 ProSiteProfiles Sigma-54 interaction domain profile. 239 399 IPR002078 GO:0005524|GO:0006355|GO:0008134
Acco1000480g0007 506 Gene3D - 230 302 IPR027417 -
Acco1000480g0007 506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 413 IPR027417 -
Acco1000480g0007 506 PANTHER TRANSCRIPTIONAL REGULATORY PROTEIN 231 300 - -
Acco1000480g0007 506 ProSiteProfiles Response regulatory domain profile. 69 188 IPR001789 GO:0000160
Acco1000480g0007 506 PRINTS FIS bacterial regulatory protein HTH signature 464 481 IPR002197 GO:0043565
Acco1000480g0007 506 PRINTS FIS bacterial regulatory protein HTH signature 481 501 IPR002197 GO:0043565
Acco1000480g0007 506 MobiDBLite consensus disorder prediction 34 67 - -
Acco1000480g0007 506 Gene3D - 341 416 - -
Acco1000480g0007 506 Gene3D - 420 500 - -
Acco1000480g0007 506 Pfam Bacterial regulatory protein, Fis family 460 496 IPR002197 GO:0043565
Acco1000480g0007 506 Pfam Sigma-54 interaction domain 231 300 IPR002078 GO:0005524|GO:0006355|GO:0008134
Acco1000480g0007 506 MobiDBLite consensus disorder prediction 215 231 - -
Acco1000480g0007 506 SUPERFAMILY CheY-like 69 137 IPR011006 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Acco1000480g0007 Sigma54_activat 1e-25 CL0023