Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco1000473g0014 ATGGCCTGCAGTCTGGACGGGGTCGCTGTTGCGTACTTGTCGCCTAGCTTGCAGAAACCTGTCCGCGCCGTTGCCCTCAGCACCGTGCCGGTGCTGCTGCTCACCGCCCGGGATGCGGTGGAAGACCGGGTGCGGGGGCTGGAAGGCGGGGCGGATGACTATCTGGTCAAGCCCTTCGCCCTGAGCGAGCTGATCGCCCGGGCACGGGCGCTGGTGCGCCGCAGCCAGGCCCGCTCCGGCAATGAACTGCAGCTGGGCTCGCTGCGCATGGACCTGGAAGCCCGCCGCGCCTTCGTGGCGGAAGAGCCGCTGGCCCTCTCCGCCCGTGAATGGGATGTGTTGGGATTCCTGCTGGCCCGCGCCGGCAAGGTGGTGGCCAAGGAACAGATCGGCTCGGCCAGCAACGGCTGGGAGCAGGGGGTGAGCGACAACGCCATCGAGAAGTGCAGAGCGCGCGCCGATGACGGACCCGTCGCTGCCGCCCTCGCTGGCGCCATCTCCGGTGTCCATCTCAGCCGCAAGCGTCTTCGCCGTCCCGGCGCTGCCTCCGTCCTCCGCCCACAGCGTCCCACCCGAACGCCGCCCCCGGCTCAGTCTCAAGCAACGGCTGCTGCTGTGGCTGATGGTGCCCGTGCTGGTGGCAGTGCCGGTGGCCGGTGCGGTGCTCTACCGGGTGATGCACGACACCGCGATCTCCTGGCTGGACCATTGCTGGCGGTGGTGAGCCTGCTGATCGGCGGCATGGCGGTGCTGCTGGCGGCGGCGGGCTGGTGGGCGACCCATCAGGGCCTGCGACCACTGTCGCGGCTGAGCGCCGAGCTGGAGCGCCGTGATCTGGCCCGGCTGGAGCCGCTCGCCGCGGAAGTGCCGGGAGAGTTGCGCCCGCTGATTGCCGCCTTCAATCGGCTGTTTGAGCGGCTGCGCCGCGCCTCGTCCGCCCAGCAGGACTTCCTGGCCAACGCCGCCCACCAGCTGCGCACGCCGCTCACCTCGCTGCGCACCGAAATCGATCTGGCGCTGCTGGAACCGCACGATCCGCAGGTGGAGCCGCTGCTCAAGCGCCTGCAGAAGTCGGTGGACCGCAGCGCGCGCCTGGCCCAGCAGATGCTCTCGATTGCCCGTGCCGAAGCCGAAACGCAGCAGCGCGAGGTGCCGCTGGACCTGCGCGACATCGCCGCCCAGGTGGCGGAAGACTGGGTGCCCCGCACCCTGGAAACCGGCATGGACCTCGGCTTCGAGCTGAGTGAGGCGCCGGTGCTGGGGCAGGGCTTCCTGCTGCGGGAGCTGCTGGAGAACCTGCTGCACAACAGCCTGAACTACGCAGGTGCCAATGCCCGCATCACCGTGCGGACCGGCGCGCAGGACGCGTGGGCCTTTCTGGAAGTGGAAGACAACGGCCCGGGCATCCCGCTGGAGGACCGCGCCCGGGCGGTGCAACGCTTCCAGCGGGGCAGTGAAGCCAAAGCCACCGGCAGCGGACTGGGGCTGGCGATTGCGGTGGACATCGCCCAGCGGCACGGCGGGCCGGCTGGAACTGCTGGATGCCACGTCCGGCCCAGGGATTGCGGGGTGCGGCTGAGTGTGCCGCGTCGGGGCGTCGCGGCGGGCTGA 1611 0.7058 MACSLDGVAVAYLSPSLQKPVRAVALSTVPVLLLTARDAVEDRVRGLEGGADDYLVKPFALSELIARARALVRRSQARSGNELQLGSLRMDLEARRAFVAEEPLALSAREWDVLGFLLARAGKVVAKEQIGSASNGWEQGVSDNAIEKCRARADDGPVAAALAGAISGVHLSRKRLRRPGAASVLRPQRPTRTPPPAQSQATAAAVADGARAGGSAGGRCGALPGDARHRDLLAGPLLAVVSLLIGGMAVLLAAAGWWATHQGLRPLSRLSAELERRDLARLEPLAAEVPGELRPLIAAFNRLFERLRRASSAQQDFLANAAHQLRTPLTSLRTEIDLALLEPHDPQVEPLLKRLQKSVDRSARLAQQMLSIARAEAETQQREVPLDLRDIAAQVAEDWVPRTLETGMDLGFELSEAPVLGQGFLLRELLENLLHNSLNYAGANARITVRTGAQDAWAFLEVEDNGPGIPLEDRARAVQRFQRGSEAKATGSGLGLAIAVDIAQRHGGPAGTAGCHVRPRDCGVRLSVPRRGVAAG 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco1000473g0014 536 MobiDBLite consensus disorder prediction 177 210 - -
Acco1000473g0014 536 SMART HisKA_10 313 378 IPR003661 GO:0000155|GO:0007165
Acco1000473g0014 536 Coils Coil 363 383 - -
Acco1000473g0014 536 CDD trans_reg_C 88 147 IPR001867 GO:0000160|GO:0003677|GO:0006355
Acco1000473g0014 536 Gene3D - 71 153 IPR036388 -
Acco1000473g0014 536 Gene3D - 37 70 - -
Acco1000473g0014 536 CDD HisKA 313 374 IPR003661 GO:0000155|GO:0007165
Acco1000473g0014 536 ProSiteProfiles Histidine kinase domain profile. 320 532 IPR005467 -
Acco1000473g0014 536 ProSiteProfiles HAMP domain profile. 261 312 IPR003660 GO:0007165|GO:0016020
Acco1000473g0014 536 Gene3D - 375 517 IPR036890 -
Acco1000473g0014 536 Gene3D - 265 374 - -
Acco1000473g0014 536 PRINTS Bacterial sensor protein C-terminal signature 458 472 IPR004358 GO:0016310|GO:0016772
Acco1000473g0014 536 PRINTS Bacterial sensor protein C-terminal signature 490 508 IPR004358 GO:0016310|GO:0016772
Acco1000473g0014 536 ProSiteProfiles Response regulatory domain profile. 1 72 IPR001789 GO:0000160
Acco1000473g0014 536 Pfam His Kinase A (phospho-acceptor) domain 314 377 IPR003661 GO:0000155|GO:0007165
Acco1000473g0014 536 SUPERFAMILY C-terminal effector domain of the bipartite response regulators 74 147 IPR016032 GO:0003677|GO:0006355
Acco1000473g0014 536 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 368 509 IPR036890 -
Acco1000473g0014 536 PANTHER SENSOR HISTIDINE KINASE YKOH 175 508 - -
Acco1000473g0014 536 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 426 508 IPR003594 -
Acco1000473g0014 536 ProSiteProfiles OmpR/PhoB-type DNA-binding domain profile. 80 178 IPR001867 GO:0000160|GO:0003677|GO:0006355
Acco1000473g0014 536 SMART HKATPase_4 421 532 IPR003594 -
Acco1000473g0014 536 SUPERFAMILY CheY-like 25 91 IPR011006 -
Acco1000473g0014 536 CDD HATPase 436 508 - -
Acco1000473g0014 536 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 296 377 IPR036097 GO:0000155|GO:0007165
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco1000473g0014 310 482 Miscellaneous Gene Families AT1G27320 24.044 5.24e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Acco1000473g0014 HATPase_c 2.7e-13 CL0025