Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco1000473g0010 ATGCGCTCCCACGGCTTGAAGGTGAGCACCCATGCCAGCGGCCCGGACCTGCTGGCGGCGCTGGACAAGGAACCGGACCCGATGGGCTGCATCGTCCTGGATGTGCGGATGGAGCCGCTGTCCGGCCTGCAGGTGCAGGATGAACTGATGCGCCGGGGCGTGAAGCTGCCGGTCATCTTCCTGAGCGGCCACGGGGACATCCCGATGGCGGTGGATGCGATGCAGAAGGGCGCGATCGACTTCGTGGAGAAGCCCTTCAACGATCAGGCGCTGGTGAACAAGGTGCAGCGCGCACTGGCGCTGGACACGCATCGCCATCGCGAAGCGGTGGCGCATGCGGATGCGGCCGGGCGTCTGGCCAGCCTGACCGACCGCGAACGCGAGGTGGCGCTGCGGGTGGCGGCCGGCAAACTGAACAAGCAGGTGGCGGATGAGCTGGGCATCGCCATCCGCACGGTGGAAGTGCACCGCGCGCGGGCCTTCACCAAGCTGGGTCTGCGCTCCGCCGCGGAACTGGCCACGCTGCTGGAGCGCTTCGAGCTGAAGTGA 549 0.6812 MRSHGLKVSTHASGPDLLAALDKEPDPMGCIVLDVRMEPLSGLQVQDELMRRGVKLPVIFLSGHGDIPMAVDAMQKGAIDFVEKPFNDQALVNKVQRALALDTHRHREAVAHADAAGRLASLTDREREVALRVAAGKLNKQVADELGIAIRTVEVHRARAFTKLGLRSAAELATLLERFELK 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco1000473g0010 182 Gene3D - 1 109 - -
Acco1000473g0010 182 ProSiteProfiles Response regulatory domain profile. 1 99 IPR001789 GO:0000160
Acco1000473g0010 182 Pfam Response regulator receiver domain 3 95 IPR001789 GO:0000160
Acco1000473g0010 182 SUPERFAMILY C-terminal effector domain of the bipartite response regulators 109 179 IPR016032 GO:0003677|GO:0006355
Acco1000473g0010 182 PRINTS LuxR bacterial regulatory protein HTH signature 122 136 IPR000792 GO:0006355
Acco1000473g0010 182 PRINTS LuxR bacterial regulatory protein HTH signature 136 152 IPR000792 GO:0006355
Acco1000473g0010 182 PRINTS LuxR bacterial regulatory protein HTH signature 152 164 IPR000792 GO:0006355
Acco1000473g0010 182 CDD LuxR_C_like 122 178 IPR000792 GO:0006355
Acco1000473g0010 182 PANTHER - 20 178 - -
Acco1000473g0010 182 SMART REC_2 1 95 IPR001789 GO:0000160
Acco1000473g0010 182 SMART luxrmega5 119 176 IPR000792 GO:0006355
Acco1000473g0010 182 ProSitePatterns LuxR-type HTH domain signature. 136 163 IPR000792 GO:0006355
Acco1000473g0010 182 ProSiteProfiles LuxR-type HTH domain profile. 115 180 IPR000792 GO:0006355
Acco1000473g0010 182 Gene3D - 113 177 IPR036388 -
Acco1000473g0010 182 Pfam Bacterial regulatory proteins, luxR family 121 175 IPR000792 GO:0006355
Acco1000473g0010 182 SUPERFAMILY CheY-like 2 116 IPR011006 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Acco1000473g0010 Response_reg 1.9e-18 CL0304