Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco1000420g0024 ATGCACGGCTGGATCATCGTCGATAAACCGCTGGGACTTGGCAGCACGCAGGTCGTCTCCGCGGTGAAGCGCGCGCTGCGCCAGGGCGGCTATGGCAAGTTCAAGGTCGGCCATGGCGGCACGCTCGATCCGCTGGCGACCGGCGTGCTGCCGGTCGCAGTCGGCGAGGCGACGAAGCTTGCCGGGCGGATGCTCGACAGCGATAAGGTGTATGATTTCACCATCCGCTTCGGCGAGCAGACCGATACGCTGGATGCGGAAGGCGTGGGTGTAGCGACGTCGGATGTGCGGCCGACGCTGGCCGACGTGGAGGCGGTGCTGCCGCGCTTCACGGGCCCGATCAGCCAGGTGCCGCCGGCGTATTCGGCGCTGAAGATCGACGGCGAGCGGGCCTATGATCTGGCGCGCGCGGGCGAGGATGTGGTGCTCGCGAGCCGGGACGTGACGGTGCATGCCCTCCATTCCTCCCCCGCCAGGGGGAGGTGGCAGCGCGACGCGCTGACGGAGGGGGAGGATACGGCGAACGTCGCATCCGCGGACACGCCCCCTCCACCACTCGCCTGCGGCGAGCGGTCCCCCTCCCCCGCTGACGCGAGGGAGGAATTGGACGAGATCACCCTCACCGCCCACGTCTCCAAAGGCACCTATATCCGCTCCCTCGCCCGCGACATCGCTTTCGCGCTCGGCACGGTCGGCCACGTCACCATGCTTCGCCGTACCAAGGCCGGCCCGTTCACCCTCGCGCCGGCGATAACGCTGGACAATCTGGCGGAAGCCGGTATGGGGCGCACCCTTGAACAGATACTCCTGCCGTTGAGGGCGGGGCTGGACGACATCCCGGCTCTACCCCTCACCCCCGATCAGGCAGGGGCGCTCCGCCAGGGGCGTGTTCTGACCGGGATCGCCACGGACGATGGCCCATACTTCGCATGCGACGGCGACACGCCGGTCGCGCTGGTATCGGTGGAGGACCAACAGGTCCGCGTCGTCCGCGGAAGGCGACACGGGTTCGCCGGAAGTCCAGGTCGCGATCCTGTCGGAGCGCATCAAGAACCTGACCGAGCACTTCAAGGGTCACAAGAAGGACAACCATTCGCGCCGCGGGCTGCTGATGATGGTCAACAAGCGGCGCTCGCTGCTCGACTATCTGCGCAAGACCGATGGCCAGCGGTATCTGGACCTGATCGCGAAGCTGGGTCTTCGCAAGTTCTGTCGTATGACGGCGAGAACGAGCCCGATCTGCTGGCGATGATCGCCGCCTCGGCCGCGATGACGCTGTCGGGCGTGCCCTTCATGGGCCCGATCGGCGCGGCGCGCGTCGGCTACAAGGACGGCGAATACGTCCTCAACCCGTCGGACGCCGAGGTGCTGACCGGCGAGCTCGACCTGATGGTCGCCGCCACGCATGACGCCGTCATGATGGTCGAATCCAATATAGCGCGCGTGTGGGAAGACGTCATGCTCGGCGCGGTGATGTTCGCACACAAGGCGTCGCAGCAGGTGATCGACGCGATCATCGATCTCGCCGAACAGGCCGCCAAGGATCCGTGGGAGTTGAAGGTCGGCGACGACCAGAAGACGGTCAAGGGCCGAGCTTAA 1599 0.6673 MHGWIIVDKPLGLGSTQVVSAVKRALRQGGYGKFKVGHGGTLDPLATGVLPVAVGEATKLAGRMLDSDKVYDFTIRFGEQTDTLDAEGVGVATSDVRPTLADVEAVLPRFTGPISQVPPAYSALKIDGERAYDLARAGEDVVLASRDVTVHALHSSPARGRWQRDALTEGEDTANVASADTPPPPLACGERSPSPADAREELDEITLTAHVSKGTYIRSLARDIAFALGTVGHVTMLRRTKAGPFTLAPAITLDNLAEAGMGRTLEQILLPLRAGLDDIPALPLTPDQAGALRQGRVLTGIATDDGPYFACDGDTPVALVSVEDQQVRVVRGRRHGFAGSPGRDPVGAHQEPDRALQGSQEGQPFAPRAADDGQQAALAARLSAQDRWPAVSGPDREAGSSQVLSYDGENEPDLLAMIAASAAMTLSGVPFMGPIGAARVGYKDGEYVLNPSDAEVLTGELDLMVAATHDAVMMVESNIARVWEDVMLGAVMFAHKASQQVIDAIIDLAEQAAKDPWELKVGDDQKTVKGRA 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco1000420g0024 532 Pfam 3' exoribonuclease family, domain 2 433 497 IPR015847 -
Acco1000420g0024 532 MobiDBLite consensus disorder prediction 386 406 - -
Acco1000420g0024 532 Gene3D Pseudouridine synthase 1 276 - -
Acco1000420g0024 532 Gene3D - 398 522 IPR027408 -
Acco1000420g0024 532 Pfam TruB family pseudouridylate synthase (N terminal domain) 33 155 IPR002501 GO:0006396
Acco1000420g0024 532 Pfam tRNA pseudouridylate synthase B C-terminal domain 218 274 IPR032819 -
Acco1000420g0024 532 NCBIfam tRNA pseudouridine(55) synthase TruB 2 256 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Acco1000420g0024 532 MobiDBLite consensus disorder prediction 159 199 - -
Acco1000420g0024 532 Hamap tRNA pseudouridine synthase B [truB]. 1 493 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Acco1000420g0024 532 CDD PseudoU_synth_EcTruB 3 259 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Acco1000420g0024 532 SUPERFAMILY Pseudouridine synthase 1 265 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Acco1000420g0024 532 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 1 261 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Acco1000420g0024 532 MobiDBLite consensus disorder prediction 333 373 - -
Acco1000420g0024 532 SUPERFAMILY Ribonuclease PH domain 2-like 424 518 IPR036345 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco1000420g0024 2 125 NAC Transcription Factor Family AT3G57150 33.871 1.52e-08 55.5