Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco1000397g0006 ATGAACACGACTTTCGGAGACAGCCCTCAAATTATGCAGAGTTTAACTTCGCCACAACTGTCTCGGCAATCATCCAAAGCGAGTAGCAAGCATAAGCAATTAGTGGAGGCATCAAGCCCTGTTCCTAGTGGATGCTGCCGAGGTTTCGGTAATGTCAAGACCACGGGACCAACCTTGTCAGCTTTGCAATACCAGCAGCAGCTCCAACATTCCAAGAGATTGGAAGGAAAGGTGGAAGATTTGGAGAAAGAAGTGCGGAGGCAGAAAGAGCTGCGAGTGATGTATAGGAAAAGGATGGAAAGAACACAGGACTATCTAAGATACTGCCTCCAAATAGCACAAGAGAATGGTATATTGCACCTCATCACCCACTCCAAAGGCGACCTCCAACAATCCCCTATATCAGTTCACACCGTCAACTCCGCCGCCAGTCCTCAGATTCCCTCTCCCATCCACCGCCACCACCATCACCACCCTGATCTAGCAGCCATCATTGAACAAGCCAAAATCCAAGGATGGCACATTGATCCTACTGAGGTTCAATTGGAGGAGAAGATAGGACAGGGAAGCACGGCGGAGATATACAGAGCAACTTGGCGAGGATATGATGTGGCGGTGAAGTGCTTATCTGCGGATTTTTTCAGGACCAACGCAAATGGCGTCGTATTTTTTGCTCAAGAGGTGGAAACTCTGTCGAGGCAGAGGCACAGATTTGTGCTTCAGCTGATGGGGGCATGCCTAGAGCCTCCCCACCACGCCTGGGTGGTCACCGAGCACGTCAGCACCACCCTCAAAGACTGGCTTCACGGCGCCGGCAAGAGAAGCAGAGTCAGGCAGGTCCCACTTCCTTCCCTGAAGGACAGGGTGATGAGGGCTCTGGAGATCGCTCAAGCCATGCAGTATCTGCATGAACAAAAGCCCAAGATCATCCACCGTGACCTCAAACCCAGCAACATTTTCTTGGACGATGCCCTCCACGTCAGGATAGCCGATTTCGGCCATGCCCGCTTCTTGGCTGACCACGAAATGGCCCTCACCGGCGAAACAGGCATGCCATATATATACATACACGCTCTCTCTCTTAATTGA 1089 0.5142 MNTTFGDSPQIMQSLTSPQLSRQSSKASSKHKQLVEASSPVPSGCCRGFGNVKTTGPTLSALQYQQQLQHSKRLEGKVEDLEKEVRRQKELRVMYRKRMERTQDYLRYCLQIAQENGILHLITHSKGDLQQSPISVHTVNSAASPQIPSPIHRHHHHHPDLAAIIEQAKIQGWHIDPTEVQLEEKIGQGSTAEIYRATWRGYDVAVKCLSADFFRTNANGVVFFAQEVETLSRQRHRFVLQLMGACLEPPHHAWVVTEHVSTTLKDWLHGAGKRSRVRQVPLPSLKDRVMRALEIAQAMQYLHEQKPKIIHRDLKPSNIFLDDALHVRIADFGHARFLADHEMALTGETGMPYIYIHALSLN 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco1000397g0006 362 MobiDBLite consensus disorder prediction 1 36 - -
Acco1000397g0006 362 Gene3D Transferase(Phosphotransferase) domain 1 261 355 - -
Acco1000397g0006 362 Coils Coil 64 98 - -
Acco1000397g0006 362 SUPERFAMILY Protein kinase-like (PK-like) 159 344 IPR011009 -
Acco1000397g0006 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Acco1000397g0006 362 SMART serkin_6 180 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco1000397g0006 362 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 61 352 - -
Acco1000397g0006 362 Gene3D Phosphorylase Kinase; domain 1 168 260 - -
Acco1000397g0006 362 ProSiteProfiles Protein kinase domain profile. 180 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco1000397g0006 362 Pfam Protein kinase domain 181 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco1000397g0006 362 ProSitePatterns Protein kinases ATP-binding region signature. 186 207 IPR017441 GO:0005524
Acco1000397g0006 362 MobiDBLite consensus disorder prediction 1 40 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco1000397g0006 178 352 MAP Kinase Kinase Kinase AT5G03730 35.795 1.45e-26 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-8 Acco1000397g0006 Pkinase 1.5e-27 CL0016