Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco1000397g0004 ATGGGAGATCCCTGGTCTATTGTTCCGTACAATGATTACCTTTACGATTTCCCATTTCCCGATGACTTCCTCTATTTCCAGAGTGATCCTGATCCACGTCCATCCAATGAGCACAAAGCTTCATTGTTTCCACAACAACACAGTAATGCCATTTTTCAGAGATATGTTCCGGATTTGGGTCAAGCGATTCAAGACACCCCCATGGGCCATTTTCCCCATCAAGATTGCAACTTCGAAGCGGGTCATCAAGTGATTCAGGATACACCAATGAGCCATATTCCCCATCAAGAGTGCAACTTCGAAGCGGGTCCATCTCAAGTTCACTGGCAAAGTCACATGCCGAATCAGGAGAATGTGCACACACAACAGGATTTCCCCGATGTGGCTCAACTTCCAAACTCGCCACGAAACCCACTCCCTTTTCTTTGTAGTTGCTGTCAAATTCTTAGAGAAATCATTCACACTAATGGGATTCAGTTAGCGAAACTGGAGATTCACGGAAGAGTGGGTGAAATCTGTCATGGAATTCTACGACAGAATATAAAAGCGGGTTCCACCGGCGGTCACCAAAGTCACTTGCTTGATTTTAGCAAAACAAGTATGGGGGAGATCAAGAATTATATAAGGCAGTACTGCGCGGAGAAAAATGCAGCAGGCTACTACACTCTGTTAGATCCACTGTCAGCTTATTATGAAGCCCTCTGCATTGGAATGGAATGGAATGAGGAGTTAAACGACGACTTCCTCGACATTGATAACAATTCTGGGGGTGCGTTTGACGAGGCTGATGATATGGATAGGACTACTAGGGCTAGTCTTTCAGCGCAGAGGGAGAGAGCGGGGAAGATGAAACTGAGCGATTTCAGCGATGTGTTTCATCTACCAATTGAAGAAGCAGCCAAGCTAGTGAACTTGTGTCCTACAGTTGTAAAGAAGATATGCCGTAAAGAAGGATTACCCAGATGGCCTCACAGAAAGTTAAAGAGTATAATGAGGAAAGTAGACATATTGCGAGGGATTTTAAACTCACCAGATCAGGAGGCTGCGGCAAGGGCTCGAGCGATGGCAGAACTTGAGAGACTTCATCGAGAAATCATTCAACACTGTGGTGGAATCATGCCCACTTCATTAAATTTCAATGCTTGA 1146 0.4503 MGDPWSIVPYNDYLYDFPFPDDFLYFQSDPDPRPSNEHKASLFPQQHSNAIFQRYVPDLGQAIQDTPMGHFPHQDCNFEAGHQVIQDTPMSHIPHQECNFEAGPSQVHWQSHMPNQENVHTQQDFPDVAQLPNSPRNPLPFLCSCCQILREIIHTNGIQLAKLEIHGRVGEICHGILRQNIKAGSTGGHQSHLLDFSKTSMGEIKNYIRQYCAEKNAAGYYTLLDPLSAYYEALCIGMEWNEELNDDFLDIDNNSGGAFDEADDMDRTTRASLSAQRERAGKMKLSDFSDVFHLPIEEAAKLVNLCPTVVKKICRKEGLPRWPHRKLKSIMRKVDILRGILNSPDQEAAARARAMAELERLHREIIQHCGGIMPTSLNFNA 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco1000397g0004 381 Pfam RWP-RK domain 283 330 IPR003035 -
Acco1000397g0004 381 ProSiteProfiles RWP-RK domain profile. 270 350 IPR003035 -
Acco1000397g0004 381 PANTHER PROTEIN RKD4 120 365 IPR044607 GO:0003700
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco1000397g0004 292 369 AtRKD Transcription Factor Family AT5G66990 36.709 3.53e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Acco1000397g0004 RWP-RK 1.4e-19 No_clan