Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco1000380g0030 ATGATCGACGCTGGTCGCGCCGAAGGCCACTTTGGTGAGATGCAGCATGGCCGCGCGATTGCTGCGTCGTTACCCGCCCAGCCCCCAGAGCGACGCCAGCCCCAGGAACGAAAAGAACCCCATCACGTCGGTCGCGGTCGTCACGAACACCGCCGACGACACCGCCGGATCGACATTGGCCTTGTCGAGCGCCACCGGCACGATGACGCCGACGAGGCCGGCGACGATCGAGTTGATGACCATCGCGATCGCGAACACGATCGACAATTGCAGGTTGCCGAGGATCACATAGCTGCCGACCGCGCCGACCAGGCCGAGCGCGCCGCCGTTGCACAGCGCGATCTGGAATTCGCGCGCCAGCATGCGCACCGTGTTCGAGCTGGTGAGCTGGTTGGTCGCGAGCGCGCGGACGACGACGGCGAGCGTCTGCGTACCGGCATTGCCGCCCAGCGCCGACACGATCGGCATCAGCGCGGCGAGCAGCGCGAAGCGGGCGATCTCACCCTGGAACAGGCCGACGACCGATGCCGACAGCATCGTCGCACCCAGATTCACCACCAGCCACGCGATGCGCGTGCGCACGGTGAAGCGGATGGGTTCGTTGATGTCGCCTTCACCGGCGCCCGACAGGCGGAGGGCGTCCTCGCCCGCCTCCTGCTGGATGATGTGGACGATATCGTCGACGGTGATCATGCCGACGAGCCGGTCGGACGCATCGACCACCGCAGCGCTGATGAGCGCGTATTTCTGGAAGCGGAGCGCGACCTCTTCCTGATCCATGTCGACCGGGATCAGCGTCTGTTCGCGCTTCATCACATCGCCGATCGCGATGCTGCGCGGCGTGCGCAGGATCCACGACAGTTGGCACGTGCCGACCGGATGGTGGCCGGCATCGACGACGAAGATTTCCCAGAAGTCGGTGGTCAGCTCTTCGTGGTGGCGCAGGAAGTCGATGACGTCGCCGACGGTCCAGTGATCGGGCACCGCGATCAGCTCGCGCTGCATCAGGCGGCCGGCGGTTTCCTCCGGGTAGGACAGCGCCTCTTCGATCGCGGCGCGATCGTCGGGGTCGAGCGCGCGCAGCACGGCGCGCTGGTCGGCTTCCTCCAGATCCTCGATGATCGCGACCGCGTCGTCGGTGTCGAGCTCGCTCGCGATGTCGGCGACCTCGGTCGGGGTCAGCGCGTCGATCAGGTCCTCGCGGACGTAATCGTTCATCTCGGCGAAGACGTCGCCGTCGAGCAAGTCCTTCAGCGCGCGGGCGAGGCCGGCGCGATCCTCATGCGGGGCGATCGTCCTCGTCCAGCTCATCCTGTTCGGGGGCCAGCATCTCGGGAAGCTCGGTATCGCTCATCGCTGCCTCCGTCCGTGCTGCAATCGTGTCGTGGTGCAATCGGGGGCGTCTACCGCGCTGCGGCACGATTGGCCACCCTTCGGGGATTTGCCCTTCGGCCGAAGCGACACTACCTGCTGCGGCAACATCATAAAGGACAACACATGGCCGATACCTTCACCACGCTGACGCTGACGCTCGACACCGGGTCCGAACAGGGCGACGTCACGATCAAGCTGCGCCCCGATCTGGCGCCGAACCACGTCGCGCGCATCGGCGAGCTGGCGAACGAAGGCTTCTACAACGGCGTGCCGTTCCACCGCGTGATCCCGGGCTTCATGGCGCAGGGCGGCGACGGCGGTCGTGGCGATGGCACCGGCGGGTCGTCGAAGCCGAACCTGAAGCAGGAGTTCAACAAGGAACCGCACGTGCGCGGCGTCTGCTCGATGGCGCGGACCAGCGATCCCAATTCGGCGAACAGCCAGTTCTTCATTTGCTTCGACGACGCGCGCTTCCTCGACAACCAGTATACCGTCTGGGGCGAAGTGACCGACGGCATGGACCTGATCGACAAGCTGCCCAAGGGCGAGCCGCCCCGCAATCCGGGCAAGATCGTCAGCGCGAAGGCGGAGTAA 1968 0.6611 MIDAGRAEGHFGEMQHGRAIAASLPAQPPERRQPQERKEPHHVGRGRHEHRRRHRRIDIGLVERHRHDDADEAGDDRVDDHRDREHDRQLQVAEDHIAADRADQAERAAVAQRDLEFARQHAHRVRAGELVGRERADDDGERLRTGIAAQRRHDRHQRGEQREAGDLTLEQADDRCRQHRRTQIHHQPRDARAHGEADGFVDVAFTGARQAEGVLARLLLDDVDDIVDGDHADEPVGRIDHRSADERVFLEAERDLFLIHVDRDQRLFALHHIADRDAARRAQDPRQLARADRMVAGIDDEDFPEVGGQLFVVAQEVDDVADGPVIGHRDQLALHQAAGGFLRVGQRLFDRGAIVGVERAQHGALVGFLQILDDRDRVVGVELARDVGDLGRGQRVDQVLADVIVHLGEDVAVEQVLQRAGEAGAILMRGDRPRPAHPVRGPASREARYRSSLPPSVLQSCRGAIGGVYRAAARLATLRGFALRPKRHYLLRQHHKGQHMADTFTTLTLTLDTGSEQGDVTIKLRPDLAPNHVARIGELANEGFYNGVPFHRVIPGFMAQGGDGGRGDGTGGSSKPNLKQEFNKEPHVRGVCSMARTSDPNSANSQFFICFDDARFLDNQYTVWGEVTDGMDLIDKLPKGEPPRNPGKIVSAKAE 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco1000380g0030 655 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 514 655 IPR002130 GO:0000413|GO:0003755
Acco1000380g0030 655 SUPERFAMILY Cyclophilin-like 514 652 IPR029000 -
Acco1000380g0030 655 Gene3D - 492 655 IPR029000 -
Acco1000380g0030 655 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 510 653 IPR002130 GO:0000413|GO:0003755
Acco1000380g0030 655 MobiDBLite consensus disorder prediction 636 655 - -
Acco1000380g0030 655 MobiDBLite consensus disorder prediction 24 88 - -
Acco1000380g0030 655 MobiDBLite consensus disorder prediction 149 171 - -
Acco1000380g0030 655 MobiDBLite consensus disorder prediction 560 580 - -
Acco1000380g0030 655 MobiDBLite consensus disorder prediction 176 195 - -
Acco1000380g0030 655 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 550 562 IPR002130 GO:0000413|GO:0003755
Acco1000380g0030 655 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 606 618 IPR002130 GO:0000413|GO:0003755
Acco1000380g0030 655 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 619 634 IPR002130 GO:0000413|GO:0003755
Acco1000380g0030 655 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 545 562 IPR020892 GO:0003755|GO:0006457
Acco1000380g0030 655 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 510 639 IPR044666 -
Acco1000380g0030 655 MobiDBLite consensus disorder prediction 44 60 - -
Acco1000380g0030 655 MobiDBLite consensus disorder prediction 61 88 - -
Acco1000380g0030 655 CDD cyclophilin 518 653 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco1000380g0030 515 631 U-box Gene Family AT5G67530 40.650 3.30e-16 80.5