Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco1000232g0004 ATGGGAAAACCTATACCCAAAATTGGTTCACGTAGAAATGGACGTATTGGTTCACGTAAGAATGCGCGTAAAATACCAAAGGTAGTTATTCATGTTCAAGCTAGTTTTAACAATACCATTGTGACTATTACAGATGTACGGGGTCAGGTGATTTCTTGGTCCTCCGCCGGTACTTGTGGATTCAAGGGTCCAAGAAGGGGGACACCTTTTGCCGCTCAAACCGCAGCAGTAAATGCTATTCGGACAGTAGCGGATCAAGGTATGCAACGAGCAGAAGTCATGATAAAAGGTCCCGGTCTCGGAAGAGATGCGGCATTAAGAGCTATTCGTAGAAGTGGTATACTATTAAATTTCATACGGGATGTAACTCCTATGCCACATAATGGATGTAGGCCCCCTAAAAAAAGACAGAAAGTAAAAGCATCCACTCGGACACTGCAGTGGAAGTGTGTTGAATCAAGAGCGGACAGTAAGCGTCTTTATTATGGACGCTTTCTTCTGTCTCCACTTAGGAAAGGTCAAGCCGACACAATAGGCATTGCGATGCGAAGAGCTTTGCTCGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAGAAAATACCACATGAATATTCTACCATAGCGGGTATTCAAGAATCAGTACATGAAATTTTAATGAATTTAAAAAAAATTGTATTGAGAAGTAATCTCTATGGAACTCAGGACGCGTCTATTTGGGTCAAGGGTCCTGGATATGTAACTGCTCAAGACATAATTTTACCACCTTCTGTGGAAATCGTTGACAATACACAACATATAGCTAACCTAACAGAACCTATCAATTTGTGTATTGGATTAAAAATCGAGAGGAATCGCGGATATCGTATAAAAACAATAAATACCTTTCAAGACGGAAGTTGTTATCCTATAGATGCTGTATTCATGCCTGTTCGAAATGCAAATTTTAGTATTCATTCTTATGTGAATGGGAATGAAAAACAAGAGATACTATTTCTCGAAATATGGACAAATGGAAGTTTAACTCCTAAAGAAGCACTTTATGAAGCCTCTCGGAATTTGATTGATTTATTTATTCCTTTTTTACATGCAGACGAAAAAAACTTTAATTTAGAAAACAATCAAGACAAAGTTATTTTACCCCTTTTTACTTTTCATGATGGATTGGCAAAACTAAGGAAAAATAAAAAAGAAATAGCATTGAAATCCATTTTTATTGACCAATTAGAATTGCCTCCCAGGATCTATAATTGTCTCAAAAGGTCCAATATACATACATTATTGGAGCTTTTGAATAACAGTCAAGAAGACCTTATGAAAATGGAACATCTTCGCATAGAAGATGTAAAACGTATATTGGACATTTTAGAAATAGAAAAGCATTTTGCATAA 1398 0.3705 MGKPIPKIGSRRNGRIGSRKNARKIPKVVIHVQASFNNTIVTITDVRGQVISWSSAGTCGFKGPRRGTPFAAQTAAVNAIRTVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFIRDVTPMPHNGCRPPKKRQKVKASTRTLQWKCVESRADSKRLYYGRFLLSPLRKGQADTIGIAMRRALLGEIEGTCITRAKSEKIPHEYSTIAGIQESVHEILMNLKKIVLRSNLYGTQDASIWVKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIGLKIERNRGYRIKTINTFQDGSCYPIDAVFMPVRNANFSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHADEKNFNLENNQDKVILPLFTFHDGLAKLRKNKKEIALKSIFIDQLELPPRIYNCLKRSNIHTLLELLNNSQEDLMKMEHLRIEDVKRILDILEIEKHFA 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco1000232g0004 465 SMART rpoldneu2 162 366 IPR011263 GO:0003899|GO:0006351
Acco1000232g0004 465 NCBIfam DNA-directed RNA polymerase subunit alpha 162 459 IPR011773 GO:0003677|GO:0003899|GO:0006351
Acco1000232g0004 465 MobiDBLite consensus disorder prediction 1 20 - -
Acco1000232g0004 465 FunFam DNA-directed RNA polymerase subunit alpha 192 310 - -
Acco1000232g0004 465 CDD RNAP_alpha_NTD 153 363 - -
Acco1000232g0004 465 Gene3D - 192 310 IPR036643 -
Acco1000232g0004 465 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 192 311 IPR036643 -
Acco1000232g0004 465 Gene3D Ribosomal protein S11 10 139 IPR036967 GO:0003735|GO:0005840|GO:0006412
Acco1000232g0004 465 NCBIfam 30S ribosomal protein S11 19 135 IPR019981 GO:0003735|GO:0005840|GO:0006412
Acco1000232g0004 465 SUPERFAMILY Translational machinery components 24 136 - -
Acco1000232g0004 465 Hamap DNA-directed RNA polymerase subunit alpha [rpoA]. 139 465 IPR011773 GO:0003677|GO:0003899|GO:0006351
Acco1000232g0004 465 Pfam Bacterial RNA polymerase, alpha chain C terminal domain 397 459 IPR011260 GO:0003677|GO:0003899|GO:0006351
Acco1000232g0004 465 SUPERFAMILY C-terminal domain of RNA polymerase alpha subunit 402 459 - -
Acco1000232g0004 465 FunFam 30S ribosomal protein S11, chloroplastic 11 138 - -
Acco1000232g0004 465 ProSitePatterns Ribosomal protein S11 signature. 106 128 IPR018102 -
Acco1000232g0004 465 Pfam Ribosomal protein S11 29 136 IPR001971 GO:0003735|GO:0005840|GO:0006412
Acco1000232g0004 465 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 28 136 IPR001971 GO:0003735|GO:0005840|GO:0006412
Acco1000232g0004 465 Gene3D - 403 463 - -
Acco1000232g0004 465 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 169 359 IPR011263 GO:0003899|GO:0006351
Acco1000232g0004 465 Pfam RNA polymerase Rpb3/RpoA insert domain 199 291 IPR011262 GO:0003899|GO:0006351|GO:0046983
Acco1000232g0004 465 SUPERFAMILY RBP11-like subunits of RNA polymerase 146 365 IPR036603 GO:0006351|GO:0046983
Acco1000232g0004 465 Hamap 30S ribosomal protein S11 [rpsK]. 11 138 IPR001971 GO:0003735|GO:0005840|GO:0006412
Acco1000232g0004 465 Gene3D - 162 357 IPR036603 GO:0006351|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco1000232g0004 29 126 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 35.514 2.31e-11 60.1