Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco1000180g0016 ATGCGGGCGCTGCCGGTGGACAAGCAGTGCGATGTGCTGGTGCTCGACATCAACATGCCGGGGCGCAGCGGCCTGGATGTGCTGCATGTGCTCAAGGATGAAGGCACGGCCACCCGGGTGCTGATCGTCTCGATGTATCCCGAAGACCAGTACGCGATCCGCGCCCTGCGCGCCGGCGCGTACGGGTATGTCAACAAGGGCGGGGATCCGCAGCTCCTGGTGCAGGCGGAGCTGCGCCTGGACGGCGCGCAGCGCGAAGAGGTGCGCTCCGGCGTGCCGACCTGGGCCTGGATCACCGGCGCGGTGCTGCTGACCCTGGCGGTGCTGGCGGCCGGCGGCTGGTGGTGGTGGCGCAGCGCGCAGGTGCCGGAGGTGCAGACCGGCGCGGTGGCGTCCCGCTCGGCGGGCGGCGGCAATGCCGTGCTGCAGGCCACCGGCTATGTCACCGCCCGCCGCTCGGCCACGGTGTCCACCCAGATCACCGGCACCCTGACCGAAGTCCTGTTTGAAGAAGGCGACAAGGTCACCAAGGGCCAGGTGTTGGCGCGGCTGGAAGACCATGCCCTGCGGGCGGCGCTGGAAGCGTCCCGGGCGTCGGTCAAGAGTGCGCAGGCCAATGTCGAGGCCCTGCGGGCGCAGTGGCTGCAGGCCCAGTCGGACCTGCGTCGGCAGGAGGAGCTGTCCGCCAGCGGCATGACCACCCGCCAGGCGGCTGAGCAGGCCCGCACCGCTGTCAATAGCTACGCCGCCCAACTGGAGGCGCGTCGCCGGGAAGCGGAAGCCGCTGTAGCCCAGTCGGCACAGACCCAGGTGAACTTCGACTACACCGTGGTGCGGGCGCCGTTCTCCGGCGTGATCACCGCCAAGGCGGCGCAGGTCGGCGAAATCGTCTCGCCGCTGTCCGCGGGGGGCGGCTTCACCCGCACGGGCGTGGGCACAATCGTCGACATGGATTCGCTGGGGGTCGATGTCGATGTCAACGAGGCCTACATCGGTCAGGTCAAGGCCGACATGCCGGCGGAAGCCGTGCTCGATGCCTATCCCGACTGGCGCATTCCCGCGCATGTGATCGCGGTGGTGCCAGCGGCCGACCGGGGCAAGGCCACCGTCAAGGTCCGCGTCGCACTGGAGCAGAAGGACCAGCGCCTGGTGCCCGACATGGGCGTGCGGGTGTCCTTCCTCGCCGCCCGAGCGGACACCGCCGCGGCCCCGCCCCCGGGGGTGCTGGTGGCCCGTTCCGCGGTGGTCACCCGCAACGACGCCCCCGCGGCTTTTGTGCTCAACGGCGAGCGCGCCGAGCTGCGGCGTCTGCGCACCGGCACCCCGGTGGGCGAGCAGGCGGTGGTGCTTGAAGGCCTGAAGGCCGGGGAGACGGTGGTGCTGAGTCCCCCCGATACCCTCAAAAGCGGCGATGAAGTCCGCGTGACCCCGGCGGCCCGCTGA 1443 0.7096 MRALPVDKQCDVLVLDINMPGRSGLDVLHVLKDEGTATRVLIVSMYPEDQYAIRALRAGAYGYVNKGGDPQLLVQAELRLDGAQREEVRSGVPTWAWITGAVLLTLAVLAAGGWWWWRSAQVPEVQTGAVASRSAGGGNAVLQATGYVTARRSATVSTQITGTLTEVLFEEGDKVTKGQVLARLEDHALRAALEASRASVKSAQANVEALRAQWLQAQSDLRRQEELSASGMTTRQAAEQARTAVNSYAAQLEARRREAEAAVAQSAQTQVNFDYTVVRAPFSGVITAKAAQVGEIVSPLSAGGGFTRTGVGTIVDMDSLGVDVDVNEAYIGQVKADMPAEAVLDAYPDWRIPAHVIAVVPAADRGKATVKVRVALEQKDQRLVPDMGVRVSFLAARADTAAAPPPGVLVARSAVVTRNDAPAAFVLNGERAELRRLRTGTPVGEQAVVLEGLKAGETVVLSPPDTLKSGDEVRVTPAAR 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco1000180g0016 480 Gene3D - 302 399 - -
Acco1000180g0016 480 NCBIfam efflux RND transporter periplasmic adaptor subunit 142 475 IPR006143 GO:0016020|GO:0022857|GO:0055085
Acco1000180g0016 480 SUPERFAMILY CheY-like 7 76 IPR011006 -
Acco1000180g0016 480 Gene3D Helix hairpin bin 184 273 - -
Acco1000180g0016 480 Gene3D - 400 462 - -
Acco1000180g0016 480 Pfam Response regulator receiver domain 8 76 IPR001789 GO:0000160
Acco1000180g0016 480 PANTHER MULTIDRUG RESISTANCE PROTEIN MDTA 99 478 - -
Acco1000180g0016 480 Pfam Barrel-sandwich domain of CusB or HlyD membrane-fusion 142 387 IPR032317 -
Acco1000180g0016 480 CDD REC_NarL-like 9 76 - -
Acco1000180g0016 480 Gene3D - 3 92 - -
Acco1000180g0016 480 MobiDBLite consensus disorder prediction 461 480 - -
Acco1000180g0016 480 Coils Coil 249 269 - -
Acco1000180g0016 480 Gene3D - 154 301 - -
Acco1000180g0016 480 SUPERFAMILY HlyD-like secretion proteins 143 392 - -
Acco1000180g0016 480 Coils Coil 193 213 - -
Acco1000180g0016 480 ProSiteProfiles Response regulatory domain profile. 1 81 IPR001789 GO:0000160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Acco1000180g0016 HlyD_D23 1.3e-22 CL0105