Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Acco1000130g0028 | ATGCGTCACACTCGATCCATGCGAATCTTGGTGATTGAAGACGAGTCCCGCCTTGCCAGCTATCTGAAAAAGGGCCTGAGCGAGAGCGGCTACGTGGTGGACGTGGCAGAGGACGGGATCGATGGGCAGCATCTGGCCGTCGAGGGTCAATACGACTTGGTGGTGCTGGACGTGATGCTCCCAGGCATCGATGGATTTGAGGTGTTGCGGCGACTCAGGGAACACAAATCCACGCCTGTGCTGATGCTCACTGCGCGGGACAAGGTCGAAGACCGCGTGCAAGGCCTCAAAGGGGGGGCGGACGACTATCTCATCAAGCCGTTCGCCTTTACCGAACTGCTCGCACGCATCGAGGCGCTGCTGCGTCGCGGCGCCAGCCACGCGTCGCAGCCGTTGACCTCGCTGCGCCTGGGAGATCTGGACGTCGACCTGGCCCGGCGAAAGGTCACCCGCGCGGGTCGAAGGCTTGACCTCTCTCCGAAGGAATTTACGCTACTCACCGTAATGCTTCGTCGTCAGGGAGAGGTCCTGTCACGAACCGTTCTCGCGGAACAGGTATGGGACCTGAACTTCGACAGCGAGACAAACGCGATCGACGTGGCGGTACGGAGACTGCGCGCGAAATTGGACGAGGGTTTTGACAGGCCACTGTTGCACACGGTCCGTGGGATGGGCTACGTGCTGGAGGATCGGGGTTGA | 699 | 0.6094 | MRHTRSMRILVIEDESRLASYLKKGLSESGYVVDVAEDGIDGQHLAVEGQYDLVVLDVMLPGIDGFEVLRRLREHKSTPVLMLTARDKVEDRVQGLKGGADDYLIKPFAFTELLARIEALLRRGASHASQPLTSLRLGDLDVDLARRKVTRAGRRLDLSPKEFTLLTVMLRRQGEVLSRTVLAEQVWDLNFDSETNAIDVAVRRLRAKLDEGFDRPLLHTVRGMGYVLEDRG | 232 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Acco1000130g0028 | 232 | Pfam | Response regulator receiver domain | 9 | 118 | IPR001789 | GO:0000160 | |
| Acco1000130g0028 | 232 | CDD | trans_reg_C | 140 | 228 | IPR001867 | GO:0000160|GO:0003677|GO:0006355 | |
| Acco1000130g0028 | 232 | Gene3D | - | 86 | 124 | - | - | |
| Acco1000130g0028 | 232 | PANTHER | REGULATOR OF RPOS | 7 | 228 | IPR039420 | - | |
| Acco1000130g0028 | 232 | Gene3D | - | 126 | 231 | IPR036388 | - | |
| Acco1000130g0028 | 232 | SMART | REC_2 | 7 | 117 | IPR001789 | GO:0000160 | |
| Acco1000130g0028 | 232 | SMART | Trans_reg_C_3 | 153 | 228 | IPR001867 | GO:0000160|GO:0003677|GO:0006355 | |
| Acco1000130g0028 | 232 | FunFam | Two-component system response regulator | 128 | 230 | - | - | |
| Acco1000130g0028 | 232 | Gene3D | - | 4 | 85 | - | - | |
| Acco1000130g0028 | 232 | ProSiteProfiles | Response regulatory domain profile. | 8 | 121 | IPR001789 | GO:0000160 | |
| Acco1000130g0028 | 232 | SUPERFAMILY | CheY-like | 4 | 130 | IPR011006 | - | |
| Acco1000130g0028 | 232 | CDD | REC_OmpR_CusR-like | 9 | 107 | - | - | |
| Acco1000130g0028 | 232 | ProSiteProfiles | OmpR/PhoB-type DNA-binding domain profile. | 132 | 230 | IPR001867 | GO:0000160|GO:0003677|GO:0006355 | |
| Acco1000130g0028 | 232 | SUPERFAMILY | C-terminal effector domain of the bipartite response regulators | 133 | 229 | IPR016032 | GO:0003677|GO:0006355 | |
| Acco1000130g0028 | 232 | NCBIfam | heavy metal response regulator transcription factor | 9 | 228 | IPR006291 | GO:0003677|GO:0006355 | |
| Acco1000130g0028 | 232 | FunFam | DNA-binding response regulator PhoB | 6 | 85 | - | - | |
| Acco1000130g0028 | 232 | Pfam | Transcriptional regulatory protein, C terminal | 153 | 228 | IPR001867 | GO:0000160|GO:0003677|GO:0006355 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Acco1000130g0028 | 7 | 148 | Response Regulator Gene Family | AT4G31920 | 29.167 | 2.25e-10 | 58.2 |
Transcription factors information