Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Acco1000130g0028 ATGCGTCACACTCGATCCATGCGAATCTTGGTGATTGAAGACGAGTCCCGCCTTGCCAGCTATCTGAAAAAGGGCCTGAGCGAGAGCGGCTACGTGGTGGACGTGGCAGAGGACGGGATCGATGGGCAGCATCTGGCCGTCGAGGGTCAATACGACTTGGTGGTGCTGGACGTGATGCTCCCAGGCATCGATGGATTTGAGGTGTTGCGGCGACTCAGGGAACACAAATCCACGCCTGTGCTGATGCTCACTGCGCGGGACAAGGTCGAAGACCGCGTGCAAGGCCTCAAAGGGGGGGCGGACGACTATCTCATCAAGCCGTTCGCCTTTACCGAACTGCTCGCACGCATCGAGGCGCTGCTGCGTCGCGGCGCCAGCCACGCGTCGCAGCCGTTGACCTCGCTGCGCCTGGGAGATCTGGACGTCGACCTGGCCCGGCGAAAGGTCACCCGCGCGGGTCGAAGGCTTGACCTCTCTCCGAAGGAATTTACGCTACTCACCGTAATGCTTCGTCGTCAGGGAGAGGTCCTGTCACGAACCGTTCTCGCGGAACAGGTATGGGACCTGAACTTCGACAGCGAGACAAACGCGATCGACGTGGCGGTACGGAGACTGCGCGCGAAATTGGACGAGGGTTTTGACAGGCCACTGTTGCACACGGTCCGTGGGATGGGCTACGTGCTGGAGGATCGGGGTTGA 699 0.6094 MRHTRSMRILVIEDESRLASYLKKGLSESGYVVDVAEDGIDGQHLAVEGQYDLVVLDVMLPGIDGFEVLRRLREHKSTPVLMLTARDKVEDRVQGLKGGADDYLIKPFAFTELLARIEALLRRGASHASQPLTSLRLGDLDVDLARRKVTRAGRRLDLSPKEFTLLTVMLRRQGEVLSRTVLAEQVWDLNFDSETNAIDVAVRRLRAKLDEGFDRPLLHTVRGMGYVLEDRG 232
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Acco1000130g0028 232 Pfam Response regulator receiver domain 9 118 IPR001789 GO:0000160
Acco1000130g0028 232 CDD trans_reg_C 140 228 IPR001867 GO:0000160|GO:0003677|GO:0006355
Acco1000130g0028 232 Gene3D - 86 124 - -
Acco1000130g0028 232 PANTHER REGULATOR OF RPOS 7 228 IPR039420 -
Acco1000130g0028 232 Gene3D - 126 231 IPR036388 -
Acco1000130g0028 232 SMART REC_2 7 117 IPR001789 GO:0000160
Acco1000130g0028 232 SMART Trans_reg_C_3 153 228 IPR001867 GO:0000160|GO:0003677|GO:0006355
Acco1000130g0028 232 FunFam Two-component system response regulator 128 230 - -
Acco1000130g0028 232 Gene3D - 4 85 - -
Acco1000130g0028 232 ProSiteProfiles Response regulatory domain profile. 8 121 IPR001789 GO:0000160
Acco1000130g0028 232 SUPERFAMILY CheY-like 4 130 IPR011006 -
Acco1000130g0028 232 CDD REC_OmpR_CusR-like 9 107 - -
Acco1000130g0028 232 ProSiteProfiles OmpR/PhoB-type DNA-binding domain profile. 132 230 IPR001867 GO:0000160|GO:0003677|GO:0006355
Acco1000130g0028 232 SUPERFAMILY C-terminal effector domain of the bipartite response regulators 133 229 IPR016032 GO:0003677|GO:0006355
Acco1000130g0028 232 NCBIfam heavy metal response regulator transcription factor 9 228 IPR006291 GO:0003677|GO:0006355
Acco1000130g0028 232 FunFam DNA-binding response regulator PhoB 6 85 - -
Acco1000130g0028 232 Pfam Transcriptional regulatory protein, C terminal 153 228 IPR001867 GO:0000160|GO:0003677|GO:0006355
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco1000130g0028 7 148 Response Regulator Gene Family AT4G31920 29.167 2.25e-10 58.2
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Acco1000130g0028 Response_reg 5.6e-28 CL0304