Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco1000130g0011 ATGGCCTCGGTCAACAACTACGACTTGCTTATCCTTGACGGGCAGTTGCCGGGCATCGATGGGCTCGCCATGCTGAGCGCGATCCGTCAGAGCAGCGATGTGCCCATCCTGATGGTCACGGCCCGCTCACGCGTTGAAGATCGCGTCAAGGGCCTGCAAAGCGGCGCTGACGACTACCTCACCAAACCCTACGCGTTCTCCGAACTCGTGGCCCGGGTTCAGGTTCTCCTGCGCCGGCGCACGGGCGGTCGACAGGTGACCGAGGAGTCTGTGTACCGTGTGGCCGATCTGGAGGTGGATCCCATCCGTCGCAAGGTCAGCCGCGCTGGTCAGCGGATTGACCTCACCACCAAGGAGTTTGGTCTCCTCGCGCTGTTGATGCGTCGAAAAGGCGAGGTGCTGTCCAGAACAGAGATCGCGGAGCAGGTTTGGGACATGAACTTCGACAGTGACACCAATGAGGTTGAGGTGGCTATACGCCGACTGCGCGTGAAGATTGATCAGCCGTTCGATCGGGCCCTGATCCACACCGTGCGTGGGATGGGGTACGTCATCGAAGACCGGCCCGCATGA 573 0.6126 MASVNNYDLLILDGQLPGIDGLAMLSAIRQSSDVPILMVTARSRVEDRVKGLQSGADDYLTKPYAFSELVARVQVLLRRRTGGRQVTEESVYRVADLEVDPIRRKVSRAGQRIDLTTKEFGLLALLMRRKGEVLSRTEIAEQVWDMNFDSDTNEVEVAIRRLRVKIDQPFDRALIHTVRGMGYVIEDRPA 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco1000130g0011 190 PANTHER REGULATOR OF RPOS 5 185 IPR039420 -
Acco1000130g0011 190 ProSiteProfiles Response regulatory domain profile. 1 77 IPR001789 GO:0000160
Acco1000130g0011 190 Pfam Response regulator receiver domain 5 74 IPR001789 GO:0000160
Acco1000130g0011 190 Pfam Transcriptional regulatory protein, C terminal 110 184 IPR001867 GO:0000160|GO:0003677|GO:0006355
Acco1000130g0011 190 SMART Trans_reg_C_3 110 185 IPR001867 GO:0000160|GO:0003677|GO:0006355
Acco1000130g0011 190 ProSiteProfiles OmpR/PhoB-type DNA-binding domain profile. 89 187 IPR001867 GO:0000160|GO:0003677|GO:0006355
Acco1000130g0011 190 Gene3D - 82 188 IPR036388 -
Acco1000130g0011 190 SMART REC_2 1 73 IPR001789 GO:0000160
Acco1000130g0011 190 FunFam Two-component system response regulator 86 187 - -
Acco1000130g0011 190 CDD trans_reg_C 97 185 IPR001867 GO:0000160|GO:0003677|GO:0006355
Acco1000130g0011 190 Gene3D - 42 79 - -
Acco1000130g0011 190 SUPERFAMILY CheY-like 5 87 IPR011006 -
Acco1000130g0011 190 SUPERFAMILY C-terminal effector domain of the bipartite response regulators 87 186 IPR016032 GO:0003677|GO:0006355
Acco1000130g0011 190 Gene3D - 1 41 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco1000130g0011 5 80 Response Regulator Gene Family AT2G25180 36.842 8.01e-10 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Acco1000130g0011 Trans_reg_C 5.1e-27 CL0123