Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco1000126g0017 ATGGCGACGCCTGCCGGGCCTGCGGGCATTGCGTCAGCGCCTGTCCGGAGCGGGCCATCACCCTGGTGCGGCGGGAGCCGCGGCCGGCGGGGCAGCCCTGGTTGCCGCCGATCTAGCCGCTTTTGCCTGGACAATGGACCCACGATGCACCGCTTGCTGCTGATCGACGACGACGAGGCCCTGGCCGGGCCTCTGACCCACTACCTGGCCCGCTTCGATTTTGAAGTGAGCGCGGTCACCCGGCCGAGCCTGGCGCTCGAGCGCCTGGCTGCGGACCGGTTTGACGCGATCATCCTCGACGGCATGCTGCCGGAGATGGATGGTTTCGCGTTCTGCCGCCAGATCCGCGCCAGCCAGGACCTGTGGCGCGAGATTCCCATCCTGATGCTGACGGCGCGCGGCGATCTGACCGACCGGGTGGTGGGGTTGGAACTGGGCGCTGACGACTATCTGGCCAAACCCTTCGAGCCGCGGGAACTCGCTGCGCGCCTGCAGACGATTCTTCGCCGCACGCGACTGGGACCAGCGCCCGCGCCCGCGCCCGTGGCGACAGCTTCGTCCAACGCGGGTGTCCTGCGATTCGATGGCCTGGAAATCGACGCCAGCCGACGGGAGGTGCGGACGGACGTCGGCGTGGTCGATCTCACCAGCACCGAATATGAGCTGCTGGCGCTCCTGGCGCGGGAGCCGGGGCGGGTGTTCACCCGGGACGAGATCCTGAACCGCCTGCGCGGGCAGGAGGCGGACCTCTACACCCGGGCGGTGGACATCCTGGTGAGCCGCCTGCGCAAGAAACTGGAACCCGTGGAGCCGGTGAAGACGCTGCGCAATGCGGGCTACTGCTTTGCGTTGCCGGAGCGGGCATCGTGA 870 0.6897 MATPAGPAGIASAPVRSGPSPWCGGSRGRRGSPGCRRSSRFCLDNGPTMHRLLLIDDDEALAGPLTHYLARFDFEVSAVTRPSLALERLAADRFDAIILDGMLPEMDGFAFCRQIRASQDLWREIPILMLTARGDLTDRVVGLELGADDYLAKPFEPRELAARLQTILRRTRLGPAPAPAPVATASSNAGVLRFDGLEIDASRREVRTDVGVVDLTSTEYELLALLAREPGRVFTRDEILNRLRGQEADLYTRAVDILVSRLRKKLEPVEPVKTLRNAGYCFALPERAS 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco1000126g0017 289 SMART REC_2 50 164 IPR001789 GO:0000160
Acco1000126g0017 289 ProSiteProfiles Response regulatory domain profile. 51 168 IPR001789 GO:0000160
Acco1000126g0017 289 ProSiteProfiles OmpR/PhoB-type DNA-binding domain profile. 189 284 IPR001867 GO:0000160|GO:0003677|GO:0006355
Acco1000126g0017 289 Pfam Response regulator receiver domain 53 164 IPR001789 GO:0000160
Acco1000126g0017 289 SMART Trans_reg_C_3 210 282 IPR001867 GO:0000160|GO:0003677|GO:0006355
Acco1000126g0017 289 CDD REC_OmpR 53 154 - -
Acco1000126g0017 289 Gene3D - 133 170 - -
Acco1000126g0017 289 Gene3D - 48 132 - -
Acco1000126g0017 289 Gene3D - 188 287 IPR036388 -
Acco1000126g0017 289 SUPERFAMILY C-terminal effector domain of the bipartite response regulators 187 283 IPR016032 GO:0003677|GO:0006355
Acco1000126g0017 289 SUPERFAMILY CheY-like 47 174 IPR011006 -
Acco1000126g0017 289 Pfam Transcriptional regulatory protein, C terminal 213 282 IPR001867 GO:0000160|GO:0003677|GO:0006355
Acco1000126g0017 289 CDD trans_reg_C 197 282 IPR001867 GO:0000160|GO:0003677|GO:0006355
Acco1000126g0017 289 PANTHER REGULATOR OF RPOS 49 287 IPR039420 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco1000126g0017 42 169 Response Regulator Gene Family AT4G31920 33.846 8.70e-14 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Acco1000126g0017 Response_reg 2.4e-24 CL0304