Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco1000126g0005 ATGTTTGAAGGCTACAAGGTCGTGTTTGTGGAAGACGACCTGCCAGTGCGGGTGAGCCTGACGCAGACGCTGGAACTGGAAGGGCTGGAGGTGCTGCCCTGCCGCAGCGCGGAAGAAGCGCTGCCGCACATCCAGCCCGGCGCCCAGGTGGTGATGGTGACGGATGTGCGCCTGCCCGGCATGGACGGGCGCGCCCTGCTGGACCATGTGCGGGCGACCGACCCTGGCATTCCGGTGATCCTCATCACCGCGCATGGTGACGTGCAGATGGCGGTGCAGGCGATGCGTACCGGCGCTTATGACTTCATCGAGAAGCCGTTTGCGCCGGAGCGTCTGCTGGACGCGGTGATGCGGGCGCTCGACCTGCGCATGTTGCGGCATTCCGCGGAGGAACTGCGGGCGCAGTTGCAGCGGGCCAGTGGCATTGAGGCGGTGCTGCTGGGGCGTTCGGCAGCCATGCAGCAATTGCGTCGGCAGATCCTCAACCTGGCGGGCACCTCGGCCGATGTGATGATCCTGGGGGAGACCGGCACCGGCAAGGAACTGGTGGCGCGTTGCCTGCATGACCAAAGCCCGCGCCGCGACCGGCATTTCGTCGCCATCAACTGCGGTGGTCTGCCGGAGGCGCTGTTTGAGAGCGAGCTGTTCGGTCATGAGCCGGGCTCCTTCACGTCGGCGGCCAAGCGGCGCATTGGCAAGATCGAGCATGCGAATGGCGGGACGCTGCTGCTGGATGAGATCGAGACAATGCCGGTGCCGCTGCAGATCAAGCTGCTGCGAGTCCTGCAGGAGCGGCGGATCGAGCGGCTGGGGCCTGCGCGCGGCCGCGCTGCGGGACCTGCCGAGCCTGAACTGGCGCGGCAGATGGAGCTGGTGGAGAAGGCGCTGATCGAGCAGGCGCTACGTCGCACGCAGGGCAAGGTGCCGGCGGCAATGGAGCTGCTGGGGACGCCGCGCAAGACGCTCTATGACAAGCTGCATCGGCATGGGATTCAGCTGGATGATTTCCGCTGA 1014 0.6637 MFEGYKVVFVEDDLPVRVSLTQTLELEGLEVLPCRSAEEALPHIQPGAQVVMVTDVRLPGMDGRALLDHVRATDPGIPVILITAHGDVQMAVQAMRTGAYDFIEKPFAPERLLDAVMRALDLRMLRHSAEELRAQLQRASGIEAVLLGRSAAMQQLRRQILNLAGTSADVMILGETGTGKELVARCLHDQSPRRDRHFVAINCGGLPEALFESELFGHEPGSFTSAAKRRIGKIEHANGGTLLLDEIETMPVPLQIKLLRVLQERRIERLGPARGRAAGPAEPELARQMELVEKALIEQALRRTQGKVPAAMELLGTPRKTLYDKLHRHGIQLDDFR 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco1000126g0005 337 ProSiteProfiles Sigma-54 interaction domain profile. 146 337 IPR002078 GO:0005524|GO:0006355|GO:0008134
Acco1000126g0005 337 CDD REC_DctD-like 7 136 - -
Acco1000126g0005 337 Gene3D - 5 145 - -
Acco1000126g0005 337 SMART AAA_5 166 327 IPR003593 GO:0016887
Acco1000126g0005 337 Pfam Response regulator receiver domain 7 116 IPR001789 GO:0000160
Acco1000126g0005 337 CDD AAA 153 274 - -
Acco1000126g0005 337 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 272 IPR027417 -
Acco1000126g0005 337 Pfam Bacterial regulatory protein, Fis family 289 328 IPR002197 GO:0043565
Acco1000126g0005 337 SMART REC_2 5 116 IPR001789 GO:0000160
Acco1000126g0005 337 PRINTS FIS bacterial regulatory protein HTH signature 295 312 IPR002197 GO:0043565
Acco1000126g0005 337 PRINTS FIS bacterial regulatory protein HTH signature 312 332 IPR002197 GO:0043565
Acco1000126g0005 337 FunFam DNA-binding transcriptional regulator NtrC 3 134 - -
Acco1000126g0005 337 PANTHER TRANSCRIPTIONAL REGULATORY PROTEIN 283 334 - -
Acco1000126g0005 337 ProSiteProfiles Response regulatory domain profile. 6 120 IPR001789 GO:0000160
Acco1000126g0005 337 Pfam Sigma-54 interaction domain 146 274 IPR002078 GO:0005524|GO:0006355|GO:0008134
Acco1000126g0005 337 Gene3D - 146 334 IPR027417 -
Acco1000126g0005 337 SUPERFAMILY CheY-like 3 190 IPR011006 -
Acco1000126g0005 337 ProSitePatterns Sigma-54 interaction domain ATP-binding region B signature. 232 247 IPR025943 -
Acco1000126g0005 337 ProSitePatterns Sigma-54 interaction domain ATP-binding region A signature. 170 183 IPR025662 -
Acco1000126g0005 337 SUPERFAMILY Homeodomain-like 279 331 IPR009057 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco1000126g0005 6 112 Response Regulator Gene Family AT4G16110 30.275 2.60e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Acco1000126g0005 Sigma54_activat 8.8e-49 CL0023