Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco1000082g0010 ATGCAACGATTCTGGGCCATGATCGATGAGGATCGTCGCCCCCCGCCCGCGGCCCCGCTGTCTGCGTCCTCCATCACCGCCGCCGCTGCCGCCATCCTGGTCACCTGGGCCGCACGGGTCTTTGCGGGCGTGGAACTGCCCTTCCTGTTCTGCCTGGGGGCCATTCTGTATGCGTCGCTGAACGAAGGCTTGGTGTCGGGCCTCGTCGCGACGGGGGTGACGCTCACCGGGACGACGCTGTTCGCCAGTCCGTCGAGCCCGCTGGTCACGGGCCGCAACCTCGTCATCGTGACCGCCTTTGGGGCGGCCCTGTCGATCACCGGCGAATTGATGCAGCGCGCACAGCGCCGGGAACAGCGGGCCGCGGCGCATGCGCGGCGACGCGAACAGACCTTGCAGATCATGTTCGATGATTCGCCCGCGGCGATGCTGGTGGTCGATCCCGCCGATCGGATCGCCGCCGTGAACGACGCGACCGCCGAGCTGTTCGGCATAGACCGCCGTGCGTTCGCCGGATTGCCGCTCGACCTGTTCGTGCCGCCATCGTCGCGCAACGCCGCGGCGCCGCATCGATCGATCACCGCGGACGGACGAACGCTGCACGTCCGGGTTCTGTCGAAGCCCATCCCCCTCGCCGGGCGCGCCTACAGCATGCTGTACCTTCGCGACGAAAGCGAGGCGATCAAGGCCGCCGAGCAACTCGCCGAAACGCAGCGCGGGCTCTACCGGATCGCGCGAGCCACATCGCTGGGCCAATTGGGATCGTCGATCGCGCACGAGCTCAACCAGCCATTGGGCGCGATCGCCAATTATCTGGGCGTCGCGCAAGCGCTGCTCGCCGGCCATACGCCCCAGGTTGCGCCTGCGAACGAGGCGCTCGGCGACGCGCTGCGGCAGGTGTTTCGCACGGCGGCAGTGCTGCGCAAGCTGCGCGAATTCGTCGCCCGGCGGCCGCCGACGTTGCAATGGCTGGACGTTCACGCGCTGATGGAAGACGTCGTCAGGCTGGCGCATTTGGCCGTGAAGGAGTCGGGCGCGCAGTTCGAAGCCTGCATCGACCGGGGGCCTGCGGAGATACTGGTCGACGCGGTGCAGATCCAGCAGGTCCTGTTGAACCTTCTGGTCAACGCCGCCGAGGCTGTCGAGAATCGCCCGTCGCCTTCCATCGGACTGCGCAGCTGGAGCGAGCATCCGGACACGCTGACCATCGCCGTCGAGGACAGTGGCCCGGGCGTGCCGCTCAAGGAGGATCGCGATCTGTTCGCACCATTCCAGTCAACGAAAGCCGAAGGGGTAGGGATCGGCCTCACCATCTGCCGCAGCATCGTCGAGGCGCATGGGGGCCGCATATGGTGCGACAACGAGTCGACGTTGGGCGGCGCACGATTCCTGCTCTCACTACCACGCCGGGATGCATAG 1419 0.6737 MQRFWAMIDEDRRPPPAAPLSASSITAAAAAILVTWAARVFAGVELPFLFCLGAILYASLNEGLVSGLVATGVTLTGTTLFASPSSPLVTGRNLVIVTAFGAALSITGELMQRAQRREQRAAAHARRREQTLQIMFDDSPAAMLVVDPADRIAAVNDATAELFGIDRRAFAGLPLDLFVPPSSRNAAAPHRSITADGRTLHVRVLSKPIPLAGRAYSMLYLRDESEAIKAAEQLAETQRGLYRIARATSLGQLGSSIAHELNQPLGAIANYLGVAQALLAGHTPQVAPANEALGDALRQVFRTAAVLRKLREFVARRPPTLQWLDVHALMEDVVRLAHLAVKESGAQFEACIDRGPAEILVDAVQIQQVLLNLLVNAAEAVENRPSPSIGLRSWSEHPDTLTIAVEDSGPGVPLKEDRDLFAPFQSTKAEGVGIGLTICRSIVEAHGGRIWCDNESTLGGARFLLSLPRRDA 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco1000082g0010 472 Pfam PAS domain 132 170 IPR000014 -
Acco1000082g0010 472 SMART HKATPase_4 361 471 IPR003594 -
Acco1000082g0010 472 ProSiteProfiles PAS repeat profile. 128 172 IPR000014 -
Acco1000082g0010 472 PRINTS Bacterial sensor protein C-terminal signature 455 468 IPR004358 GO:0016310|GO:0016772
Acco1000082g0010 472 PRINTS Bacterial sensor protein C-terminal signature 419 429 IPR004358 GO:0016310|GO:0016772
Acco1000082g0010 472 PRINTS Bacterial sensor protein C-terminal signature 430 448 IPR004358 GO:0016310|GO:0016772
Acco1000082g0010 472 PRINTS Bacterial sensor protein C-terminal signature 401 415 IPR004358 GO:0016310|GO:0016772
Acco1000082g0010 472 Gene3D - 321 472 IPR036890 -
Acco1000082g0010 472 NCBIfam PAS domain S-box protein 126 186 IPR000014 -
Acco1000082g0010 472 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 362 469 IPR003594 -
Acco1000082g0010 472 SUPERFAMILY PYP-like sensor domain (PAS domain) 119 223 IPR035965 -
Acco1000082g0010 472 CDD HisKA 249 313 IPR003661 GO:0000155|GO:0007165
Acco1000082g0010 472 ProSiteProfiles Histidine kinase domain profile. 256 471 IPR005467 -
Acco1000082g0010 472 SMART HisKA_10 249 319 IPR003661 GO:0000155|GO:0007165
Acco1000082g0010 472 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 247 313 IPR036097 GO:0000155|GO:0007165
Acco1000082g0010 472 PANTHER SENSOR HISTIDINE KINASE 119 470 - -
Acco1000082g0010 472 SMART pas_2 130 195 IPR000014 -
Acco1000082g0010 472 Coils Coil 469 472 - -
Acco1000082g0010 472 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 323 468 IPR036890 -
Acco1000082g0010 472 Gene3D PAS domain 115 223 - -
Acco1000082g0010 472 CDD PAS 139 186 IPR000014 -
Acco1000082g0010 472 Gene3D - 226 315 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco1000082g0010 217 470 Histidine Kinase Gene Family AT5G10720 23.693 2.23e-07 51.6