Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco1000053g0019 ATGGAATTCTCTGTAAGAGCTGCGGAACTAGCAAGTCTATTAGAAAGTCGAATTAGCAACTTTGTCACTAGTTTTCAATTGGATGAGATCGGTCGAGTGGTGTCCGTTGGAGATGGTATTGCACGTGTTTATGGATTGAACGAGATTCAAGCTGGGGAAATGGTTGAATTTGCCAGCGGTGTCAAAGGAATAGCCTTGAATCTTGAGAATGAGAATGTGGGAATTGTTGTCTTTGGTAGTGATACCGCTATCAAAGAAGGGGATCTTGTCAAACGCACTGGATCTATTGTGGATGTTCCTGCAGGAAAGGCTATGCTAGGGCGTGTGGTCGACGCCTTGGGGGTACCTATTGATGGAAGAGGGGCTCTAAGCGATCACGAGCGAAGACGTGTCGAAGTGAAAGCCCCTGGGATTATTGAACGTAAATCTGTGCACGAGCCTATGCAAACAGGGTTAAAAGCGGTAGATAGCCTGGTTCCTATAGGCCGTGGTCAACGAGAACTTATAATCGGGGACCGACAAACTGGAAAAACTGCTATTGCTATCGATACCATATTAAACCAAAAGCAAATGAACTCAAGGGCCACCTCTGAGAGTGAGACATTGTATTGTGTCTATGTAGCGATTGGACAGAAACGCTCAACTGTGGCACAATTAGTTCAAATTCTTTCAGAAGCGAATGCTTTAGAATATTCCATTCTTGTCGCAGCCACCGCTTCGGATCCTGCTCCTCTGCAATTTCTGGCCCCATATTCTGGGTGTGCCATGGGGGAATATTTCCGCGATAATGGAATGCACGCATTAATAATCTATGATGATCTTAGTAAACAGGCCGTGGCATATCGACAAATGTCATTATTGTTACGCCGACCACCAGGCCGTGAGGCTTTCCCAGGCGATGTTTTCTATTTACATTCCCGTCTCTTAGAAAGAGCCGCTAAACGATCGGACCAGACAGGTGCAGGTAGCTTGACCGCCTTACCCGTCATTGAAACACAAGCTGGAGACGTATCGGCCTATATTCCCACCAATGTGATCCCCATTACTGATGGACAAATCTGTTCGGAAACAGAGCTCTTTTATCGCGGAATTAGACCCGCTATTAACGTCGGCTTATCTGTCAGTCGCGTCGGGTCTGCCGCTCAGTTGAAAACTATGAAACAAGTCTGCGGTAGCTCAAAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGCTCAATTTGGGTCAGACCTTGATGCAGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTTACAGAAGTACCGAAACAACCACAATATGCACCACTTCCAATTGAAAAAGAAATTTTAGTCATTTATGCAGCTGTCAATGGATTCTGTGATCGAATGCCATTAGACAGAATTTCTCAATATGAGAGAGCCATTCCAAGTAGTATAAAACCGGAATTACTACAATCCCTGAAAGGTAGAGCCCGTAAGCAACCTAGAGTTTCCGTTTCAGCGGAATCTCATGGAGGGCTGTCTGAACTCATTCATTGA 1527 0.4565 MEFSVRAAELASLLESRISNFVTSFQLDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVIPITDGQICSETELFYRGIRPAINVGLSVSRVGSAAQLKTMKQVCGSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEKEILVIYAAVNGFCDRMPLDRISQYERAIPSSIKPELLQSLKGRARKQPRVSVSAESHGGLSELIH 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco1000053g0019 508 Pfam ATP synthase alpha/beta chain, C terminal domain 382 479 IPR000793 GO:0015986
Acco1000053g0019 508 NCBIfam F0F1 ATP synthase subunit alpha 5 480 IPR005294 GO:0015986|GO:0045261|GO:0046933
Acco1000053g0019 508 Gene3D - 383 500 IPR038376 -
Acco1000053g0019 508 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 151 375 IPR000194 GO:0005524
Acco1000053g0019 508 Gene3D - 96 382 IPR027417 -
Acco1000053g0019 508 Gene3D - 4 95 IPR023366 -
Acco1000053g0019 508 Hamap ATP synthase subunit alpha [atpA]. 3 508 IPR005294 GO:0015986|GO:0045261|GO:0046933
Acco1000053g0019 508 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 384 480 - -
Acco1000053g0019 508 PIRSF F_ATPase_subunit_alpha 3 501 IPR005294 GO:0015986|GO:0045261|GO:0046933
Acco1000053g0019 508 Pfam ATP synthase alpha/beta family, beta-barrel domain 29 94 IPR004100 GO:0046034|GO:1902600
Acco1000053g0019 508 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 4 485 IPR005294 GO:0015986|GO:0045261|GO:0046933
Acco1000053g0019 508 FunFam ATP synthase subunit alpha, mitochondrial 96 382 - -
Acco1000053g0019 508 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 12 96 IPR036121 GO:0046034|GO:1902600
Acco1000053g0019 508 CDD ATP-synt_F1_alpha_N 29 94 - -
Acco1000053g0019 508 CDD ATP-synt_F1_alpha_C 386 484 IPR000793 GO:0015986
Acco1000053g0019 508 CDD F1-ATPase_alpha_CD 96 378 IPR033732 GO:0032559
Acco1000053g0019 508 FunFam ATP synthase subunit alpha 3 95 - -
Acco1000053g0019 508 ProSitePatterns ATP synthase alpha and beta subunits signature. 366 375 IPR020003 GO:0005524
Acco1000053g0019 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 381 IPR027417 -
Acco1000053g0019 508 FunFam ATP synthase subunit alpha 383 507 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco1000053g0019 62 381 Primary Pumps ATPases(2) AT4G38510 26.444 2.20e-24 104