Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Acco1000039g0013 | ATGTTGGTTCGCTACTTCACAGGGAACACAACTGATGAGAATGGGAACAAAGAGTTCAACGGAAGCAGCACTAAGTTTAATGACATAATGAATGGAGTTGTGGATATTGTTGCTGCTGCTGTTACGATTGTTGTGGTTGCCATTCCAGAAGGGCTTCCTTTGGCTGTGACTTTGACGCGTGCTTACTCCATGAAGAAGATGATGGTTGATATGGCTATGGTGAGGAAGCTTTCTGCCTGTGAGACGATGGGGTCTACAACAACCATCTGTACTGATAAGACTGGCACTCTCACGCTTAATCAGATGAAAGTGACTAAATTCTGGCTTGGAGAAAAACTTATGGAAGAAAAACCTCTTGAATCTTCAGTTCATTCAAATGTTCTTCAATTGATCAAAGAAGGGGTTGCCCTTAACACTACAGGTAGTGTTTACAAGTCTAAATCAACAAATTTAGAGTATGAGTTTTCAGGTAGTCCAACAGAAAAGGCTATTCTTTCTTGGGCTATTCTTGATCTGAACATGAACATGGAGGAGTTGACGCAAAGTTCCACCATCCTTCATGTGGAAGCCTTCAATTCAATGAAGAAGAGGAGTGGGGTTTTGATTAGAAGAAAAGAAAACAACAAAATTCATGCACATTGGAAAGGAGCAGCTGAGATGGTACTAAGATTGTGTTCAAAGTACCATTATGCTTCTGGCAACATCAAAACTCTTGACAATGACAAGAAGTTGGTGTTTGAGCAAATCATTCAAGGAATGGCAGCCAGCAGCCTTAGGGGTATTGCCTTTGCCCATGCAGAAGTGGCTGAAGAAGAAGATAGAGGAAACCAAAAGATAAAAGAAGAGGAGCTCACCCTCTTAGGACTTGTTGGTATTAAGGATCCATGTCGTCCTGGTGTCAAGAAAGATGTACAAGATTGCCAAAAAGCAGGAGTAACTATCAAAATGATCACAGGAGACAATGTTTTCACAGCCAAAGCCATAGTTATAGAATGTGGCATCCTCCAACCTAATCAAGACACAACCGAAGCAGTCATCGAAGGAGAGGTATTTCGGAACTTGTCTGATGAGGAAAGACTGAAGAGAGCAGAGAAGATTTGTGTGATGGCCCGATCCTCTCCCTTTGACAAGCTCCTCATGGTTCAATGCCTCAAACAGAAAGGTCATGTAGTTGCAGTCACAGGAGATGGCACTAATGATGCACTAGCATTAAAAGAAGCTGATATAGGACTTTCTATGGGGATTCAAGGCACTGAAGTTGCAAAAGAAAGCTCAAATATAGTCATCTTGGACGATAATTTCCCCTCAGTTGCCACAGTTCTAAAGTGGGGAAGATGTGTCTATAACAACATCCAAAAGTTCATTCAATTTCAGCTCACAGTAAATGTTGCTGCACTTACAATTAACATTGTGGCTGCAGTATTAGCAGGAGAAGTGCCATTAACTGCTGTTTAA | 1455 | 0.4151 | MLVRYFTGNTTDENGNKEFNGSSTKFNDIMNGVVDIVAAAVTIVVVAIPEGLPLAVTLTRAYSMKKMMVDMAMVRKLSACETMGSTTTICTDKTGTLTLNQMKVTKFWLGEKLMEEKPLESSVHSNVLQLIKEGVALNTTGSVYKSKSTNLEYEFSGSPTEKAILSWAILDLNMNMEELTQSSTILHVEAFNSMKKRSGVLIRRKENNKIHAHWKGAAEMVLRLCSKYHYASGNIKTLDNDKKLVFEQIIQGMAASSLRGIAFAHAEVAEEEDRGNQKIKEEELTLLGLVGIKDPCRPGVKKDVQDCQKAGVTIKMITGDNVFTAKAIVIECGILQPNQDTTEAVIEGEVFRNLSDEERLKRAEKICVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDALALKEADIGLSMGIQGTEVAKESSNIVILDDNFPSVATVLKWGRCVYNNIQKFIQFQLTVNVAALTINIVAAVLAGEVPLTAV | 484 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Acco1000039g0013 | 484 | FunFam | Calcium-transporting ATPase | 100 | 295 | - | - | |
| Acco1000039g0013 | 484 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 96 | 300 | IPR023299 | GO:0000166 | |
| Acco1000039g0013 | 484 | Pfam | haloacid dehalogenase-like hydrolase | 87 | 408 | - | - | |
| Acco1000039g0013 | 484 | Gene3D | - | 100 | 295 | IPR023299 | GO:0000166 | |
| Acco1000039g0013 | 484 | PANTHER | CATION TRANSPORTING ATPASE | 2 | 484 | - | - | |
| Acco1000039g0013 | 484 | NCBIfam | HAD-IC family P-type ATPase | 363 | 476 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Acco1000039g0013 | 484 | NCBIfam | HAD-IC family P-type ATPase | 31 | 131 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Acco1000039g0013 | 484 | SFLD | Haloacid Dehalogenase | 72 | 447 | - | - | |
| Acco1000039g0013 | 484 | SUPERFAMILY | HAD-like | 88 | 470 | IPR036412 | - | |
| Acco1000039g0013 | 484 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 27 | 484 | IPR023298 | - | |
| Acco1000039g0013 | 484 | Gene3D | - | 87 | 439 | IPR023214 | - | |
| Acco1000039g0013 | 484 | PRINTS | H+-transporting ATPase (proton pump) signature | 394 | 410 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Acco1000039g0013 | 484 | PRINTS | H+-transporting ATPase (proton pump) signature | 426 | 451 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Acco1000039g0013 | 484 | PRINTS | H+-transporting ATPase (proton pump) signature | 246 | 264 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Acco1000039g0013 | 484 | PRINTS | P-type cation-transporting ATPase superfamily signature | 288 | 299 | - | - | |
| Acco1000039g0013 | 484 | PRINTS | P-type cation-transporting ATPase superfamily signature | 394 | 413 | - | - | |
| Acco1000039g0013 | 484 | PRINTS | P-type cation-transporting ATPase superfamily signature | 90 | 104 | - | - | |
| Acco1000039g0013 | 484 | PRINTS | P-type cation-transporting ATPase superfamily signature | 310 | 320 | - | - | |
| Acco1000039g0013 | 484 | PRINTS | P-type cation-transporting ATPase superfamily signature | 418 | 430 | - | - | |
| Acco1000039g0013 | 484 | SFLD | p-type atpase | 72 | 447 | IPR044492 | - | |
| Acco1000039g0013 | 484 | FunFam | Calcium-transporting ATPase | 289 | 439 | - | - | |
| Acco1000039g0013 | 484 | Gene3D | - | 25 | 484 | - | - | |
| Acco1000039g0013 | 484 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 92 | 98 | IPR018303 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Acco1000039g0013 | 3 | 484 | Primary Pumps ATPases | AT3G22910 | 69.610 | 0.0 | 655 |