Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g2149 ATGGGTTTCATTTGTCAGGGCTTCAAAGAGTGTTGCTTTTGGTTGCTCAAGGATTTTCTAAGCTTTCAATTGCCGCTGGAGATGAAGCCCGTCTTTTGTGGAAACCTGGATTTCGATGCCCGCCAGTCTGATGTTGAGAGACTCTTCAGAAGATATGGGAAAGTTGACAGAGTGGACTTGAAGTCTGGGTTTGCTTTTGTTTACATGGAAGATGAGCGTGATGCTGAGTATGCAATTAGAAGACTTGATAGAACAGAGTTTGGTAGAAAGGGGCGCCGAATACGTGTCGAGTGGACTAAGCAAGAACGTGATAGCAGAAGGTCAGGTGATTCAAGGAGATCTTCAACTAATATGAAACCGTCAAAGACATTGTTTGTCATAAATTTTGATCCTGTTCACATCAGGACAAGGGATTTAGAGAGGCACTTTGATCCCTATGGGAAAATATTGAATATAAGGATAAGAAGGAATTTTGCTTTTGTTCAGTACGAATCCTTGGAGGATGCCAGTAGAGCATTGGAGACAACCAACATGAGCAAGTTACTGGATCGGGTTATAACAGTGGAGTATGCAATAAGAGATGATGATGATAGAAGAAATGGATACAGTCCTGATAGAAAAGGCCGTGACATATCCCCTGATGGGAGATATGGTCGCGGTAGATCACCTAGCCCTTATCGTAGAGGTAGGGGTAGCCCAGACTATGGCCATGGATCAAATCCAACTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGAACAAAACGAAAGCCCGTCAAATGGAAGATATGACAGCCGATCACCACCACCCCGCCGTGTGTCCCGTTCCCCGGGAGAAGTTGAATAG 849 0.4476 MGFICQGFKECCFWLLKDFLSFQLPLEMKPVFCGNLDFDARQSDVERLFRRYGKVDRVDLKSGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGDSRRSSTNMKPSKTLFVINFDPVHIRTRDLERHFDPYGKILNIRIRRNFAFVQYESLEDASRALETTNMSKLLDRVITVEYAIRDDDDRRNGYSPDRKGRDISPDGRYGRGRSPSPYRRGRGSPDYGHGSNPTSRPEPRGSPKYEQNESPSNGRYDSRSPPPRRVSRSPGEVE 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g2149 282 MobiDBLite consensus disorder prediction 196 216 - -
Acco09g2149 282 FunFam Serine/arginine-rich splicing factor RS31 28 112 - -
Acco09g2149 282 Gene3D - 27 103 IPR012677 -
Acco09g2149 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 90 IPR000504 GO:0003723
Acco09g2149 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 186 IPR000504 GO:0003723
Acco09g2149 282 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 123 273 - -
Acco09g2149 282 SUPERFAMILY RNA-binding domain, RBD 110 199 IPR035979 GO:0003676
Acco09g2149 282 Gene3D - 104 268 IPR012677 -
Acco09g2149 282 SMART rrm1_1 30 97 IPR000504 GO:0003723
Acco09g2149 282 SMART rrm1_1 123 189 IPR000504 GO:0003723
Acco09g2149 282 SUPERFAMILY RNA-binding domain, RBD 28 115 IPR035979 GO:0003676
Acco09g2149 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 193 IPR000504 GO:0003723
Acco09g2149 282 FunFam Serine/arginine-rich splicing factor RS31 114 204 - -
Acco09g2149 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 101 IPR000504 GO:0003723
Acco09g2149 282 MobiDBLite consensus disorder prediction 196 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g2149 Acco-ChrAcco09 38417259 38422235 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g2149 31 188 Eukaryotic Initiation Factors Gene Family AT4G34110 26.590 6.96e-10 57.8