Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g2148 ATGGCAGGAGGTGGAAGTAAGAAATCTGCTTCTGCAGCTACGTCGCCGCCTTCATCATCAGATAATAACAATCAGCATCCACCACAATCCAACAACAAGGCCACCGTGATCAAACGGTTCATAGGGGTCCGGCAGAGGCCGTCCGGACGATGGGTGGCCGAGATCAAGGACTCGTCTCAGCATGTCCGCCTCTGGCTCGGAACCTACGACACTCCAGAGGAGGCCGCCCAGGCCTACGATGAGGCAGCCCGGGCCCTCCGTGGCGAAAACGCCCGAACCAACTTCGCCTCCTCCACCACTGCCAACGCCACCAACGAAGGCCCATCGAAGCAAAGTGGACTGAGTTTTGCTTCTCTGAAAGCCAAGCTGAGCAAGAATCTTCAGAGCATAATGGCTAGGGCAAGCGATGGCAGCAGCAGTAATAAGGCATCCAAGAGCAGGGTGACTGACCATTTTACCCTTGCCAGCATATTCCACAGAAGGACTAGTTCTAATAACTACGGGCACTACAAGTTCAGCCAAATCCCTAATGATATGGTGGAGAAAGTGGTGCAGCCCAGTATAATAGTGCCGCCTGTAGGGGATCTACCCGGTGCAGTTAGTTCGTGGGAGAGCTCAAGCGTATCGGATTGTAGCTCCGAGTGGGTCGGGTTCCGGCAACCAGCTGGTTTGGACTCGGATGGGTCAGACGCCGGGGAACAACAAGGGCTTAATTTGGAGCAGCTGTTGGGTTGGGCGGATGGTCCGGATCGTGGTAATAACAATGTGTATGGAAGCAGGTTGATAAATGGAAGCGATGAACAAGATGAAGGATCGAGGAGCAAGAGGTTTAAGGTTTCTTCTTCAGTTCTTGTGCCTCCAACTTTCATTGGCTCTCCAAATAACAATGAATATGGTTCTCCTTACCATTACGGCAGTGCTTATGGATCTCCATATAATGATATTGGCGGCAAGTGA 957 0.5214 MAGGGSKKSASAATSPPSSSDNNNQHPPQSNNKATVIKRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAAQAYDEAARALRGENARTNFASSTTANATNEGPSKQSGLSFASLKAKLSKNLQSIMARASDGSSSNKASKSRVTDHFTLASIFHRRTSSNNYGHYKFSQIPNDMVEKVVQPSIIVPPVGDLPGAVSSWESSSVSDCSSEWVGFRQPAGLDSDGSDAGEQQGLNLEQLLGWADGPDRGNNNVYGSRLINGSDEQDEGSRSKRFKVSSSVLVPPTFIGSPNNNEYGSPYHYGSAYGSPYNDIGGK 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g2148 318 Gene3D AP2/ERF domain 38 97 IPR036955 GO:0003700|GO:0006355
Acco09g2148 318 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Acco09g2148 318 FunFam ethylene-responsive transcription factor RAP2-11 38 97 - -
Acco09g2148 318 MobiDBLite consensus disorder prediction 256 318 - -
Acco09g2148 318 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Acco09g2148 318 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Acco09g2148 318 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Acco09g2148 318 MobiDBLite consensus disorder prediction 277 301 - -
Acco09g2148 318 MobiDBLite consensus disorder prediction 8 35 - -
Acco09g2148 318 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 18 197 - -
Acco09g2148 318 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Acco09g2148 318 SUPERFAMILY DNA-binding domain 39 97 IPR016177 GO:0003677
Acco09g2148 318 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Acco09g2148 318 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g2148 Acco-ChrAcco09 38409028 38409984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g2148 39 96 AP2-EREBP Transcription Factor Family AT5G19790 72.414 1.96e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco09g2148 AP2 3.5e-15 CL0081