Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g2126 ATGGGGCGGGGCCCGCGTGGGGAGGCAAATGAATGTGAGCATCACAAGACTCCAAAATGCAATGATGACAGAATGTTGCGTTTTCGGTTTCTGATTGGAGACCTCTGCATGTTGCAAGTTGCTTGGCTTTTGCCACTTAAGTCTTCATCTCTCTCTCTAGCCGTTCCCATTTCTGGCTTCTCTGCGCTCTATAGCTTCCTGGGTTCTCATGTTGTAGGTAGGATTCAATATTCACGGAGAAAGAGAGAGATGGTGCGAGGGAAGACTGAGATGAGGCGTATAGAGAACGCCACAAGCAGGCAAGTGACCTTCTCAAAACGCCGAAATGGGCTGCTCAAGAAGGCCTTTGAACTCTCAGTGCTTTGTGATGCTGAGGTTGCTCTCATCATCTTCTCTCCCAGAGGCAAGCTTTATGAATTTGCTAGCTCCAGCTTGCAGGAGACAATTGAACGCTACCGCAAGCATACAAGGGATACTCAGACAGCCACCAGATTTAGTGAACAAAATATGCAGCACATGAAGCAAGAAGCAGCAAGCATGATGAAGAAAATTGAGCTTCTTGAGCTCTCCAAACGTAAACTCTTGGGGGAAGGTTTAGGGTCATGCTCCATACAAGAGTTAAACCAGATAGAACAACAGTTGGAGAAGAGTGTGAGCACCATTCGAGCAAGAAAGAATCAGGCTTACAACGAACAGATCGAGCAACTAAAAGCAAATGAAAAAGTCCTAGAAGCTGAAAATGCAAGGCTTTCTGAGAAGTACGTGCATCCACCTTATCTTATTCTTGTATCAAAAATCAGTCTTCGGTAA 810 0.4568 MGRGPRGEANECEHHKTPKCNDDRMLRFRFLIGDLCMLQVAWLLPLKSSSLSLAVPISGFSALYSFLGSHVVGRIQYSRRKREMVRGKTEMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSLQETIERYRKHTRDTQTATRFSEQNMQHMKQEAASMMKKIELLELSKRKLLGEGLGSCSIQELNQIEQQLEKSVSTIRARKNQAYNEQIEQLKANEKVLEAENARLSEKYVHPPYLILVSKISLR 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g2126 269 SUPERFAMILY SRF-like 86 163 IPR036879 GO:0003677|GO:0046983
Acco09g2126 269 PRINTS MADS domain signature 86 106 IPR002100 GO:0003677|GO:0046983
Acco09g2126 269 PRINTS MADS domain signature 121 142 IPR002100 GO:0003677|GO:0046983
Acco09g2126 269 PRINTS MADS domain signature 106 121 IPR002100 GO:0003677|GO:0046983
Acco09g2126 269 ProSiteProfiles K-box domain profile. 170 260 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco09g2126 269 Coils Coil 170 190 - -
Acco09g2126 269 ProSiteProfiles MADS-box domain profile. 84 144 IPR002100 GO:0003677|GO:0046983
Acco09g2126 269 Pfam K-box region 166 254 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco09g2126 269 Coils Coil 226 253 - -
Acco09g2126 269 Gene3D - 96 185 IPR036879 GO:0003677|GO:0046983
Acco09g2126 269 CDD MADS_MEF2_like 86 161 IPR033896 GO:0000977|GO:0045944
Acco09g2126 269 PANTHER SERUM RESPONSE FACTOR HOMOLOG 86 238 - -
Acco09g2126 269 Coils Coil 204 224 - -
Acco09g2126 269 ProSitePatterns MADS-box domain signature. 86 140 IPR002100 GO:0003677|GO:0046983
Acco09g2126 269 FunFam MADS-box protein SOC1 97 178 - -
Acco09g2126 269 SMART madsneu2 84 143 IPR002100 GO:0003677|GO:0046983
Acco09g2126 269 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 93 140 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g2126 Acco-ChrAcco09 38241062 38252422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g2126 84 237 MADS-box Gene Family AT2G45660 77.922 5.88e-84 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco09g2126 K-box 1.2e-25 No_clan