Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g2123 ATGGGTAGAGGGAGGGTTGAACTGAAGATGATAGAGAACAAAATCAACAGGCAAGTGACTTTCTCCAAAAGAAGGAACGGCCTCATGAAGAAAGCTCATGAACTGTCTGTGCTTTGTGATGCTGAGATTGCTCTCATTATTTTCTCTGGTCGTGGCAAGCTCTATGAATTCGGCAGTGCTGGTGTTACTAAAACCCTGGAACGATACCAGAGGTGCACTTTTACTTCTCAGGAGCCCAATGTTGTTGAGCTTGAAACCCAGAGCTGGTGCGAAGAGTTGGCCAAGCTAAGGGTAAAGTGTGAGTCACTTCAGAGGACTCAAAGGCATTTGCTGGGGGAAGATCTAGGGCCAATGAGTGTGAAAGAGCTTCAGGATCTAGAGAAGCAGCTTGAAAGAGCCCTGGCCCAAGCAAGGCAAAGGAAGACGGAGATAATGATAGAAGAAATGGAACATCTACGCAGAAAGGAACGGCATCTGGGGAACATGAATGAGCAGCTGAAACAGAGGGTTAATAATGTTAAAACCTTAGACACCTTCTGGAGCTACCCTTCTCATTCTCACTCTCACTCTCACTCTGCTGCAGCCAACCCCAACAACAACTCTCTCCTCGATTCCCTCCAACTTGGCTACCACCACCATCATGAGTATGCTGAAGCAGAGACATCTAATCATCAGCATGCTTCCAACTTCATGCAGGGATGGCTCCTTTGA 711 0.4712 MGRGRVELKMIENKINRQVTFSKRRNGLMKKAHELSVLCDAEIALIIFSGRGKLYEFGSAGVTKTLERYQRCTFTSQEPNVVELETQSWCEELAKLRVKCESLQRTQRHLLGEDLGPMSVKELQDLEKQLERALAQARQRKTEIMIEEMEHLRRKERHLGNMNEQLKQRVNNVKTLDTFWSYPSHSHSHSHSAAANPNNNSLLDSLQLGYHHHHEYAEAETSNHQHASNFMQGWLL 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g2123 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco09g2123 236 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco09g2123 236 Coils Coil 149 169 - -
Acco09g2123 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco09g2123 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco09g2123 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco09g2123 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 192 - -
Acco09g2123 236 Coils Coil 120 147 - -
Acco09g2123 236 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Acco09g2123 236 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Acco09g2123 236 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Acco09g2123 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Acco09g2123 236 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco09g2123 236 FunFam MADS-box transcription factor 1 13 83 - -
Acco09g2123 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Acco09g2123 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g2123 Acco-ChrAcco09 38224367 38227704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g2123 1 236 MADS-box Gene Family AT2G45650 55.039 1.38e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco09g2123 K-box 1e-28 No_clan