Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g2102 ATGTCAGCTCCAGTTGTGAAGGTCTCCTCCAGCGGTGTTGAAGGATTGTGGTCGCTGGCGATTATGAGTCAGAGGCAGAGAGGAGTGATAATTAATTGCCAGAACTCTGCATTTGGTCGCAAGGCTGGTCTTTGTTTCTCAGAAGTTTTCATAATAGAGAGCAAGATGAAGAAACAGGTTTTCATGCTGTGGTGGTTTGGAATCATGACTACACAACTCTGCTTCCTGCTGGCTGCTTCTTCTGGTGACAACGTATCATCAGATAGTAGTAGTGCGGTTAAGCTAATCACAGAAGATTCTGAGCAAGTGGTCATTGACAATGGCATTGTCCAACTCACTATTTCTAAACCTCAAGGCTATGTCATTGGAATCTCGTACCATGGAATCGACAATGTCCTAGAATCTCGTCTCGCACTACACGACAGAGGGTATTTTGATGTAGTTTGGAATGAACCACGAAAGAATAGTATTACTCAAAGAATCAACGGGACCCATTTCTCAATTGTAGCATCGGATGAGAGCCAAGTGGAGGTTTCGTTTGTAAGAACATGGACTTCCGCAATGCAAGGCACTGATGTGCCCATTAACATAGACCAAAGGTATGTATTGCGACGAGGCAGTTCTGGATTTTACTCTTATGTGATATTCGAGCGTCCACAAGGATTCCCAGCCATGGAGGTTGATCAAGTTAGGATTGTCTACAAGCTCCAAGAACACAGGTTTCATTATATGGCTGTATCAGACAATAGGCAAAGGTTCATGCCAACCATGGAAGACAGAGAGAGTGGGCAAGTCCTGGCTTATCCTGAAGCTGTTCTCTTAACCCACCCATCCGACAAAGACTTCAAAGGAGAAGTGGACGACAAATATCAGTACTCATGTGAGAACAAAGACAACAGAGTCCATGGTTGGATTAGCTTTGATTCACATGCACCCGTTGGCTTCTGGATGATAACACCTACCAACGAGTTTCGCAATGCTGGACCCACCAAGCAAGACCTCACCTCTCACGTGGGCCCCTTTACCCTTTCGATGTTTGTGAGCACCCACTACGCTGGGAAGGAGGTAACCATGGCGTTTCAAGAAGGGGAGACCTATAAGAAGGTTTTTGGGCCTGTTTTTGTGTATCTGAACTCTCTTTCAAGCAATGAGGATCCACAGACGCTTTGGCCAGATGCAGTGCAACAGATGTATAAGGAAGCCCAAAGATGGCCATATGATTTCCCACATTCACAAGACTTCTTTCCATCTACTCAACGTGGAAGTGTGGTTGGAAGATTACTGGTTCAAGATCGGTATATCCGAGGAGGGAGCCTTCTATATGCTAAATCTGCTTATGTTGGTCTCGCTCTGCCCGGTTCTGAAGGATCATGGCACACAGAAAGCAAGGGCTATCAGTTTTGGACACAAGCTGATAACAAGGGCTATTTCATGCTTAAGAATGTTATACCAGGGGACTATAACTTGTTTGCTTGGCTTCCTGGCTTTATTGGTGATTACAAATATAATAATATAATCACTATCACGCCAGGGTGTTTAATCAAATTGAATTCACTTGTATTTAATCCTCCAAGGAGTGGTTCGACCCTTTGGGAAATTGGATTTCCAGATCGCACAGCCGCAGAATTCTATATCCCAGACCCTAGTCCTAAACTCATCAACAAATTATACACTGAACAACCTAAAGACGTGTTTAGGCAATATGGACTGTGGGAACGTTATGCTGATTTATATCCACACAATGATCTAGTTTACACTGTTGGTGTTGATAGGTATGATCGAGACTGGTTTTACGCTCATGTTACAAGGAGAATAGGAAATGGGGTATATCAACCAACTACATGGAAAATAATATTTGAACTTGAGAATGCATTCACTGGAAGTTATACTCTACAATTAGCCCTAGCATCAGCCACTCATTCTCAATTGCAGGTTTGGGTGAATGAGGAAGGTGATAATATTCCTCCATTATTTGAGAGAGTAGATTTGGGAGGAGATAATGCAATAGCAAGGCATGGAATCCATGGTTTATATTGGTTGTTCAGTATTGATGTTCCAAGCGATCATTTAGTGAAAGGAACAAATACTATTTATTTAAGACAGTCAAATGCCACTAATGCTTTCCAGGGAGTTATGTATGACTATATTCGTTTAGAAGGACCTCCAACTCTAAAGCCTTGA 2181 0.4282 MSAPVVKVSSSGVEGLWSLAIMSQRQRGVIINCQNSAFGRKAGLCFSEVFIIESKMKKQVFMLWWFGIMTTQLCFLLAASSGDNVSSDSSSAVKLITEDSEQVVIDNGIVQLTISKPQGYVIGISYHGIDNVLESRLALHDRGYFDVVWNEPRKNSITQRINGTHFSIVASDESQVEVSFVRTWTSAMQGTDVPINIDQRYVLRRGSSGFYSYVIFERPQGFPAMEVDQVRIVYKLQEHRFHYMAVSDNRQRFMPTMEDRESGQVLAYPEAVLLTHPSDKDFKGEVDDKYQYSCENKDNRVHGWISFDSHAPVGFWMITPTNEFRNAGPTKQDLTSHVGPFTLSMFVSTHYAGKEVTMAFQEGETYKKVFGPVFVYLNSLSSNEDPQTLWPDAVQQMYKEAQRWPYDFPHSQDFFPSTQRGSVVGRLLVQDRYIRGGSLLYAKSAYVGLALPGSEGSWHTESKGYQFWTQADNKGYFMLKNVIPGDYNLFAWLPGFIGDYKYNNIITITPGCLIKLNSLVFNPPRSGSTLWEIGFPDRTAAEFYIPDPSPKLINKLYTEQPKDVFRQYGLWERYADLYPHNDLVYTVGVDRYDRDWFYAHVTRRIGNGVYQPTTWKIIFELENAFTGSYTLQLALASATHSQLQVWVNEEGDNIPPLFERVDLGGDNAIARHGIHGLYWLFSIDVPSDHLVKGTNTIYLRQSNATNAFQGVMYDYIRLEGPPTLKP 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g2102 726 Pfam Polysaccharide lyase family 4, domain II 443 515 IPR029413 -
Acco09g2102 726 SUPERFAMILY Galactose mutarotase-like 96 381 IPR011013 GO:0003824|GO:0005975|GO:0030246
Acco09g2102 726 FunFam Rhamnogalacturonate lyase B 416 516 - -
Acco09g2102 726 Gene3D - 416 515 - -
Acco09g2102 726 Pfam Polysaccharide lyase family 4, domain III 529 718 IPR029411 -
Acco09g2102 726 SUPERFAMILY Galactose-binding domain-like 526 719 IPR008979 -
Acco09g2102 726 CDD RGL4_C 531 719 - -
Acco09g2102 726 CDD RGL4_N 96 379 - -
Acco09g2102 726 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 95 722 - -
Acco09g2102 726 SUPERFAMILY Starch-binding domain-like 415 517 IPR013784 GO:0030246
Acco09g2102 726 Gene3D - 95 394 IPR014718 GO:0030246
Acco09g2102 726 Gene3D - 526 719 - -
Acco09g2102 726 CDD RGL4_M 419 519 IPR029413 -
Acco09g2102 726 Pfam Rhamnogalacturonate lyase family 89 286 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g2102 Acco-ChrAcco09 37998816 38006200 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g2102 89 723 Polysaccharide Lyase AT1G09910 54.702 0.0 724