Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g2016 ATGGGAGGTTGCTGCTGCAGTGCCAGAAAACCTCATCTGCATGGAACACCAGTTTATATCTATTGTCCTCCAGCTTTGGAAGAGCATGAGTCCTTAACTACTAATGATAGTACTGCAGTTCCATTCACTGCTGGATTGCTGGTGGGTTTGGACCTTCAGGGATCAACACCTGATACCTACCGGCCCCCTCCTGCACCATTGCCATATGATACAGTTTTGGGTTGTCCAGCATCAACTGATTCTGAGTCAGGCAGAGAAACAATTAGTCGGAGTAGTTTTGCAACCTTGCTTACATGTGAAGATATTGAAGACTCAGAATGCAAAGTTCAAGCTAATTCTATGCCTGCATCTCCAAGGAAGCCAGAACTAACAAAATCAAATGAACCTCATGTATTAGTGACTGAGGAAGAGGATGGTTGCCCAATTTGTCTTGAAGAATATGATGTTGAGAATCCTAAAACTCTGACCAAGTGCGAACACCACTTTCACCTATCTTGCATTCTTGAGTGGATGGAACGAAGTGACTCTTGTCCCATATGCGATCAGGAGATGATCTTTGACCAGACACTGGATTAG 576 0.441 MGGCCCSARKPHLHGTPVYIYCPPALEEHESLTTNDSTAVPFTAGLLVGLDLQGSTPDTYRPPPAPLPYDTVLGCPASTDSESGRETISRSSFATLLTCEDIEDSECKVQANSMPASPRKPELTKSNEPHVLVTEEEDGCPICLEEYDVENPKTLTKCEHHFHLSCILEWMERSDSCPICDQEMIFDQTLD 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g2016 191 SUPERFAMILY RING/U-box 134 187 - -
Acco09g2016 191 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Acco09g2016 191 FunFam Putative E3 ubiquitin-protein ligase RHB1A 116 185 - -
Acco09g2016 191 Pfam Ring finger domain 140 180 IPR001841 -
Acco09g2016 191 SMART ring_2 140 180 IPR001841 -
Acco09g2016 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 187 IPR013083 -
Acco09g2016 191 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 37 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g2016 Acco-ChrAcco09 37247679 37250779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g2016 1 191 C3H Transcription Factor Family AT4G00335 57.592 7.72e-74 219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco09g2016 09 37247679 37250779 Acco09g2016 09 37247679 37250779 ECH