LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco09g1967	ATGGAAAATCACCTCCCGGTGGACCCTCCACCTCCCCCACTGCTTCCAATATCGCCACCTCATCAAAACCCTACCTCCATCTTCCCGGCGCCGGTAGGGGCGGCATCGCAGCTGGACCCACAAGGCATGCTTGACATTGATTGGGCTAGCATTTTATCAGGGCAAAGCAACTTGCAGGTTGGGGTTGATCAGGACATTATCAATAGCAGTGTTTACAAGCCAATGGTGGAAAGTGGTGGTGGTGGTTTATCTTCGTCGAGCTTAATGGGTGGCATTAATAATGGAGTTAGTGATGATATGGAGAAGGAGAATAACAACAATAAAGAGAAAAGAAGAAGAATAATGAAGAAGACGACGACGCCGAGGTTTGAGTTTCAGACGAGAAGTGCTGATGATATTCTCGACGATGGTTACCGTTGGAGGAAGTATGGCCAGAAAGCTGTCAAAAATAGCATCTATCCCAGGAGCTACTACAGATGCACACATCACACATGCAACGTGAAGAAACAAGTGCAGAGGTTGTCCAAGGACACGAGCATAGTGGTGACAACGTACGAGGGAATCCATAACCACCCTTGTGAGAAGCTCATGGAGACTCTCACTCCTCTCCTCAAGCAAATCCAGTTCCTCACCACCCTCTCTAATTAA	648	0.4784	MENHLPVDPPPPPLLPISPPHQNPTSIFPAPVGAASQLDPQGMLDIDWASILSGQSNLQVGVDQDIINSSVYKPMVESGGGGLSSSSLMGGINNGVSDDMEKENNNNKEKRRRIMKKTTTPRFEFQTRSADDILDDGYRWRKYGQKAVKNSIYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQIQFLTTLSN	215

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco09g1967	215	Coils	Coil	93	113	-	-
	Acco09g1967	215	ProSiteProfiles	WRKY domain profile.	129	194	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Acco09g1967	215	SUPERFAMILY	WRKY DNA-binding domain	127	193	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Acco09g1967	215	FunFam	WRKY transcription factor 57	120	194	-	-
	Acco09g1967	215	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	96	195	IPR044810	GO:0003700
	Acco09g1967	215	Gene3D	WRKY domain	118	193	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Acco09g1967	215	SMART	WRKY_cls	134	193	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Acco09g1967	215	MobiDBLite	consensus disorder prediction	1	23	-	-
	Acco09g1967	215	Pfam	WRKY DNA -binding domain	135	192	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco09g1967	Acco-ChrAcco09	36553568	36557334	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco09g1967	108	215	WRKY Transcription Factor Family	AT5G41570	72.222	1.08e-55	173

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Acco09g1967		WRKY	5.7e-25	CL0274