Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1963 ATGTCCTCCTCCTCCGCCGCCGCCACCTCCTTCCTCTCTAACATCGGCCTTGGCTACTCCATAGCTATTGCCCTCGCCTTTCTCTTCCTCCTCTCCACTCTCCTCCTATCTTCCTACCTCTGCTGCCGCCCTCCCCCTCCCCCGGCCGCCGCCGACGCCGACGGTATCATTCTCCCCCGCATCATCTTCGTTGCCGACGACGATCATCACCACAACCGCGATATTGATGACTCCGTCTCATCACTCGGCCTCGCCCCTAACGTCATCAACTCGTACCCGAGGTTCTCCTACACCAAGCATGCTCTGGCCTCTGCCTCCGCCGACGATAACCATATCACGTGCTCTATCTGTTTGTGTGAGTACAAGGACTCCGAGATGCTGAGGATGATGCCGGAGTGCCGCCATTTCTTCCACCTTGTTTGCCTCGATGCATGGCTCAAGCTCAATGGCTCATGCCCGGTTTGTCGAAACTCCCCGCTTCCTACACCGATCTCGACTCCGTTGCAGGAGGTGGTGCCTCTCTCTCACTACGCCGCCGATCGGAGGCGCAGCAGTTGA 558 0.5878 MSSSSAAATSFLSNIGLGYSIAIALAFLFLLSTLLLSSYLCCRPPPPPAAADADGIILPRIIFVADDDHHHNRDIDDSVSSLGLAPNVINSYPRFSYTKHALASASADDNHITCSICLCEYKDSEMLRMMPECRHFFHLVCLDAWLKLNGSCPVCRNSPLPTPISTPLQEVVPLSHYAADRRRSS 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1963 185 SMART ring_2 114 155 IPR001841 -
Acco09g1963 185 Pfam Ring finger domain 113 156 IPR001841 -
Acco09g1963 185 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Acco09g1963 185 PANTHER RING-H2 FINGER PROTEIN ATL67 4 184 IPR044289 GO:0016567|GO:0016740
Acco09g1963 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 160 IPR013083 -
Acco09g1963 185 SUPERFAMILY RING/U-box 99 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1963 Acco-ChrAcco09 36532443 36533000 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1963 16 176 C3H Transcription Factor Family AT5G06490 35.632 2.45e-32 113