Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1890 ATGCCGGCAAAACTCTTATCGCAACTCCATCTTATCCAAGTTTCTACCTTCTCTCGTTTCCCTTCCATGAAGCTCGGAGCCTCCATTCAAACATCCCGGGCAGTCCCCATTTTCTCTCGCGTTTTCCCCTTCAGGCTCAAGTACCTGGGGTTGAAGTCTCATTCTCTACGGAATGAACTCATTGGTGTACGGAGATTCTCGACTCGGTCGTTCTCTGGGAGGGCTGGGCCGAGGTCAGAGATCAACCAGGGGAATCGGGATACAGAAAGGGTCAGGGTTTCTAAGAGCTTGATTGAGGATGAGGCTGAACTCAGTGACTGGATTGACGATTTGAAGACCGATTCTTATCGTGGCCGACTCACCAGCGAAGAGGATGACTCGGATAGGGAGATGGGTCGCAATGGAGGGAGGATTAGAGCATCTGGGTCGATGAAAGGGAGCAGGGAGAGTGGCTCGAACAGATTTGGTGAATCAACTCGGAGGAGAACCCGGGATTCATTTGAGTCGTTTTCACGGAATTCTCGTGTGAATCGGAGAGTTGAAGACAGTGACGATGAGGAGGGAAATGAATTTCGGTCTCCCAGAGGCGGTAGAGTGTCCGAAGGTCGGAATGTGAAGTCTCTCCTGGGGAAGAGAAGTGGTGAGGAGTTCCGAAGAGGAAGAAGGGATGGAAGGAGGAAATTGTATTCGGTGAGTGAGGATGATGCTGAGGAAGATGAAGAAGGGGCAAAGAAGTTCATGGGCCGCTTTGGAGATCTTATTAGTGAAGAAGATAGTGACGATGAAAATACTGCGGATGAATATGGTGATGGTGATTTACGGAAGAAGACGTTAGATTCTCAGCTGGGTCGAGAAATGGAGCTGAAGAAGAGCAGTCCAACAAGAGGTTCTCCTGAGAGATCTGACAGTTATTTAAGTGAGACCAGATTTGATCAATGTTCAATCTCGCCTCTATCCTTGAAAGGAGTCAAGGATGCTGGATATGAGAAAATGACTGTTGTGCAGGAGGCAACTCTTCCAGTAATTCTCAGAGGTAAAGATGTCCTAGCCAAGGCTAAAACAGGAACCGGAAAAACCGTTGCCTTTTTGCTTCCATCCATTGAAGTTGTTGCAAAGTCACCTCCATTTGATCGTGATCTCAAGCGACCTCCAATCCTTGTGCTTGTCATATGCCCAACTCGAGAGCTTGCAAATCAAGCTGCTGCAGAAGCCACTAAACTACTGAAGTACCACCCTTCCATTGGTGTTCAAGCTGTGATTGGGGGGACAAGACTTGCTTTGGAACAGAAACGCATGCAAGCTAACCCTTGCCAGATCCTTGTTGCTACTCCTGGAAGGCTTAGGGATCATATTGAGAATACAGCGGGCTTTGCAACTCGGCTGAGGGGTGTGCAAGTCCTTGTGCTTGATGAAGCTGATCATTTACTAGACATGGGATTTCGCAAAGACATTGAGAGGATAATTGCTGCAGTTCCTAAAGAAAGACAGACTCTTTTATTTTCTGCCACCGTTTCTGAAGAGGTCCGTCAAGTCTGCCATATTGCATTGAAAAGGGATCATGAATTTATCAATACTGTTGAAGAGGGTAGTGAGGAGACGCATTCACAGGTTCAGCAGATGCATTTAGTTGCACCATTAGCCAAACATTTCTCCTTGCTGTACGTTCTTCTAAAGGAGCATATTGCAGATGACGTTGACTATAAGGTTCTTGTTTTCTGCACAACTGCCATGGTCACAAGACTTGTTGCTGACCTTTGTGGTGAGTTGAACTTGAACGTGAGAGAAATTCATTCAAGAAAGCCTCAGAACTATAGAACGAGGGTCTCTGATGAGTTTCGGAAGTCAAAGGGCCTAATCCTTGTAACTTCAGATGTATCTGCTCGTGGAGTTGATTATCCGGATGTTACCCTGGTTATACAGTTGGGTTTGCCGGCGGATAGAGAACAGTATATCCACCGACTGGGTCGAACAGGGCGGAAAGGTAAAGCAGGGCGAGGCATATTATTACTGGCTCCTTGGGAAGAATTCTTTTTATCAACCGTAAAGGATTTACCTATCACAAAAGCCCCAGTACCTTCGGTTGATCCTGACACACAGAAAAAGGTGGAAAGGGCCCTATCCCATGTTGAGATGAAGAACAAAGAAGCAGCATATCAGGCATGGCTTGGTTACTATAATTCCAACAAGAAAGTGGGGAGAGACAAGCAAAGGCTAGTGGAGCTTGCTAATGAATTCAGTAGAACCATGGGGCTTGATAACCCTCCAGCCATTCCAAAGCTAGTTCTTGGCAAGATGGGCCTCAGAAATATTCCTGGTTTACGTTCCAAATAG 2331 0.4663 MPAKLLSQLHLIQVSTFSRFPSMKLGASIQTSRAVPIFSRVFPFRLKYLGLKSHSLRNELIGVRRFSTRSFSGRAGPRSEINQGNRDTERVRVSKSLIEDEAELSDWIDDLKTDSYRGRLTSEEDDSDREMGRNGGRIRASGSMKGSRESGSNRFGESTRRRTRDSFESFSRNSRVNRRVEDSDDEEGNEFRSPRGGRVSEGRNVKSLLGKRSGEEFRRGRRDGRRKLYSVSEDDAEEDEEGAKKFMGRFGDLISEEDSDDENTADEYGDGDLRKKTLDSQLGREMELKKSSPTRGSPERSDSYLSETRFDQCSISPLSLKGVKDAGYEKMTVVQEATLPVILRGKDVLAKAKTGTGKTVAFLLPSIEVVAKSPPFDRDLKRPPILVLVICPTRELANQAAAEATKLLKYHPSIGVQAVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLRGVQVLVLDEADHLLDMGFRKDIERIIAAVPKERQTLLFSATVSEEVRQVCHIALKRDHEFINTVEEGSEETHSQVQQMHLVAPLAKHFSLLYVLLKEHIADDVDYKVLVFCTTAMVTRLVADLCGELNLNVREIHSRKPQNYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQLGLPADREQYIHRLGRTGRKGKAGRGILLLAPWEEFFLSTVKDLPITKAPVPSVDPDTQKKVERALSHVEMKNKEAAYQAWLGYYNSNKKVGRDKQRLVELANEFSRTMGLDNPPAIPKLVLGKMGLRNIPGLRSK 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1890 776 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 308 336 IPR014014 GO:0003724
Acco09g1890 776 MobiDBLite consensus disorder prediction 119 306 - -
Acco09g1890 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 385 677 IPR027417 -
Acco09g1890 776 PANTHER RNA HELICASE 268 706 - -
Acco09g1890 776 Pfam DEAD/DEAH box helicase 333 510 IPR011545 GO:0003676|GO:0005524
Acco09g1890 776 MobiDBLite consensus disorder prediction 208 233 - -
Acco09g1890 776 SMART helicmild6 580 661 IPR001650 -
Acco09g1890 776 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 556 703 IPR001650 -
Acco09g1890 776 CDD SF2_C_DEAD 537 670 - -
Acco09g1890 776 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 339 522 IPR014001 -
Acco09g1890 776 MobiDBLite consensus disorder prediction 268 306 - -
Acco09g1890 776 Pfam Helicase conserved C-terminal domain 556 661 IPR001650 -
Acco09g1890 776 Gene3D - 531 753 IPR027417 -
Acco09g1890 776 CDD DEADc_MSS116 315 524 - -
Acco09g1890 776 Gene3D - 272 523 IPR027417 -
Acco09g1890 776 SMART ultradead3 327 540 IPR014001 -
Acco09g1890 776 MobiDBLite consensus disorder prediction 119 135 - -
Acco09g1890 776 MobiDBLite consensus disorder prediction 154 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1890 Acco-ChrAcco09 35819200 35825140 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1890 299 689 Eukaryotic Initiation Factors Gene Family AT3G19760 28.010 8.14e-47 170