Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1868 ATGTTTTTAGGCGATAGAATGGAATCGAGTAGCCTTGATAGTACTGTGTCATCCTTGACTATGGATGATGATGTGCATATTCCCCATCAGTTTTCTTCGATAACGAAGCTGCATAACAATGGTCCTGGTACTACCAGCGTCCACGAACTGCTTGAATGCCCTGTTTGCACCAGCTCAATGTATCCTCCAATCCATCAGTGTCACAATGGGCATACACTTTGTTCAACTTGTAAGACAAGGGTACACAATCGATGCCCAACCTGTAGGCAGGAACTCGGGGATATAAGGTGCCTGGCACTGGAGAAAATAGCAGAATCACTTGAACTGCCTTGCAGATATGGCTCACTTGGTTGTCCAGAGATATTTCCCTATTATAGCAAACTCAAACACGAGTCTATTTGTAACTTCAGACCATACAACTGCCCCTACGCTGGCTCAGACTGTTCTGTTGTTGGGGATATTCCATACCTTGTTACTCATTTACGGGATGACCACAGAGTTGATATGCACTCAGGATGCACCTTTAACCACCGCTACGTCAAGTCTAATCCTGTGGAAGTAGAAAATGCTACGTGGATGTTAACTGTCTTCCACTGTTTTGGTCAGTACTTCTGTCTCCATTTTGAAGCCTTCCAGCTTGGTATGGCTCCTGTGTACATGGCATTCCTCCGGTTCATGGGTGACGAAAGAGAAGCTCGGAGCTACTGCTACAGCCTGGAGATAGGAGGGAACGGACGTAAACAAATATGGGAGGGCAGCCCAAGAAGCATAAGAGACAGCCATAAAAAAGTTAGAGACAGCCATGATGGCCTCATTGTGTACAGAAACATGGCACTTTTCTTCTCAGGTGGGGATAGGAAAGAGTTGAAGCTCCGAGTCACCGGAAGGATCTGGAAAGAACAGCAAAATCCTGATGGTGGGGTGTGCATACCCAATCTCTGTAGTTAA 948 0.4599 MFLGDRMESSSLDSTVSSLTMDDDVHIPHQFSSITKLHNNGPGTTSVHELLECPVCTSSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYGSLGCPEIFPYYSKLKHESICNFRPYNCPYAGSDCSVVGDIPYLVTHLRDDHRVDMHSGCTFNHRYVKSNPVEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEREARSYCYSLEIGGNGRKQIWEGSPRSIRDSHKKVRDSHDGLIVYRNMALFFSGGDRKELKLRVTGRIWKEQQNPDGGVCIPNLCS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1868 315 SUPERFAMILY TRAF domain-like 106 298 - -
Acco09g1868 315 Pfam Seven in absentia protein family 95 294 IPR018121 GO:0005737|GO:0006511|GO:0007275
Acco09g1868 315 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 294 IPR008974 GO:0005515
Acco09g1868 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 105 IPR013083 -
Acco09g1868 315 FunFam E3 ubiquitin-protein ligase SINAT5-like 162 294 - -
Acco09g1868 315 FunFam E3 ubiquitin-protein ligase SINAT3 103 161 - -
Acco09g1868 315 SUPERFAMILY RING/U-box 44 92 - -
Acco09g1868 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 161 IPR013083 -
Acco09g1868 315 ProSiteProfiles Zinc finger SIAH-type profile. 106 166 IPR013010 GO:0008270
Acco09g1868 315 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 37 300 - -
Acco09g1868 315 ProSiteProfiles Zinc finger RING-type profile. 53 89 IPR001841 -
Acco09g1868 315 CDD Sina 167 295 - -
Acco09g1868 315 CDD RING-HC_SIAHs 51 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1868 Acco-ChrAcco09 35581417 35584140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1868 33 301 C3H Transcription Factor Family AT2G41980 75.836 3.61e-157 439
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco09g1868 09 35581417 35584140 Acco09g1868 09 35581417 35584140 ECH