Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1861 ATGATGAAGATTGAGGTAGGTCTGGGAGTCGGAGGAGATATGGTGTGGAACGAAGACGAACGAGACATGGTGGCGGCGGTTCTGGGCGATCGAGCTTTCGATTACTTGGTGAACCACTCTATTTCGAATGAGAATCTGTTAATGGCCGTTGTCACCGACGGGAATCTCCAGAAGAAGCTCTCGGATCTCGTGGAGTGTCCCAACATATCCAATTTCAGCTGGAACTACGCCATTTTCTGGCAAATTTCTCAGTCAAAATCCGGCGAATGGGTCTTAGGTTGGGGCGATGGCTGTTGCAGAGAACCCCACGAAGGCGAAGAAGAAGAAGAAAGAGGAATCCTCAGCCTTCGCATGGAGGATGAAGTTCAACAAAGGATGAGGAAGAGAGTATTGCAGAAGCTTCACACAACCTTCGGTGGTTCTGAAGAAGACAATTACGTTTATGGATTAGACCGAGTCACTGATACTGAGTTGTTCTTTCTCGCTTCTATGTATTTCTCTTTCCCTCGTGGCCATGGAGGTCCAGGTAAGTGTCTCGCGTCTGATAAACATTCATGGCTCACAGATGTACAGAAATCTTCTGTTGATTACTGTGTGAGATCGTTTCTGGTTAAATCGGCGGGAATTCAGACTGTAGTTTTGATCCCTACTGATACGGGTGTGGTGGAGTTGGGTTCTACGAAGATGGTGAAGGAGAATTTAGAATTGTTGCAGGCAATCAAATCGGAGTTCTCCATTGAATCTGCATTCCCAACGCCAAAATCGTCAATTCCAGCACCGGTTCCATCTCCTCCTCCAGTTCCGTTCACGGTTGAGAAAAGAGAGGACCTTGCCACTTTTCCAGTTTTAACAGTTTCTGATAAAGTTGAAGTAGTTCCGAAGATTTTCGGGCTGGATTTGAACCAGACGAAGAACCCGAACCCGGTTCGAACCGGCCAATTTAGAGAGAAACTTGCTATTAGGAAAATGGAGGATAGGCCTTGGTTAGGAGGTCATCACTCCAATGGCGTTCATCCTCATCCTCATCGTCATCCTCGTAATGGTGTTCATCCTTCAAGCTGGACGACAGCTAACAACAATGGCGTAAGGCAAGCCAGTCCTGTTGAAACTTATGTTCCTAGATCGTCACCGACGAGCAATTTGCCGGTTCTGGACCTTAATGGTGTTAACAACAACTATAATCATCAGCCACAAAGGAAAGTGCCGATAATGCAGATTGATTTCTCAGGAGCTACTAATTCCAGGTCTGTTGTCACGGCCGGGAGAACAAATGGCGGCGCCTGTGAATCAGAGCAATCTGATGCTGATGCTGCTGGTTCAGTCAGGGAGGAGCTGCTACCAGCCGCAGTGGGGGATGAGAGGCAGCCGAGGAAGCGTGGAAGAAAGCCGGCGAACGGCAGGGAAGAACCTCTGAACCACGTGGAAGCTGAGAGGCAGAGACGTGAGAAGCTGAACCAACGGTTCTATGCATTAAGAGCTGTGGTACCTAATATATCTAAGATGGATAAAGCCTCTTTACTGGGAGACGCCATTGCTTACATCAATGAGCTTCAGGCAAAACTGAAAGCGATGGAATCTGAGAGAGAGATCAAACTCGGAGGAAGCGGCACCTCTTCTTCGAGGGATCCATCAATAGAACCCAACTATAACTCTGGTGAGTCACAGCAATCTCCTCCTCCTCAAGTGGAAGTCCAAGCTCGTCATGACGAGGTGGTCGTGAGAGTGATCTCTCCAATCAACTCTCACCCAGTCTCACCAGTGATCAAAGCGTTAATAGAAGCACAAGTTAGCGTTGTTGATTCAAAACTTGTCACTGCAGATGAAGCTGTGTTTCACACATTTGTGATCAAGCAGCCTCAAGGGCCTGATCAGCAGCTGACAAAGGACAAGTTGATTGCTGCATTTTCCCGCCAATCCAATTCATTGACTGGCCAATTAACATAG 1944 0.4763 MMKIEVGLGVGGDMVWNEDERDMVAAVLGDRAFDYLVNHSISNENLLMAVVTDGNLQKKLSDLVECPNISNFSWNYAIFWQISQSKSGEWVLGWGDGCCREPHEGEEEEERGILSLRMEDEVQQRMRKRVLQKLHTTFGGSEEDNYVYGLDRVTDTELFFLASMYFSFPRGHGGPGKCLASDKHSWLTDVQKSSVDYCVRSFLVKSAGIQTVVLIPTDTGVVELGSTKMVKENLELLQAIKSEFSIESAFPTPKSSIPAPVPSPPPVPFTVEKREDLATFPVLTVSDKVEVVPKIFGLDLNQTKNPNPVRTGQFREKLAIRKMEDRPWLGGHHSNGVHPHPHRHPRNGVHPSSWTTANNNGVRQASPVETYVPRSSPTSNLPVLDLNGVNNNYNHQPQRKVPIMQIDFSGATNSRSVVTAGRTNGGACESEQSDADAAGSVREELLPAAVGDERQPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKAMESEREIKLGGSGTSSSRDPSIEPNYNSGESQQSPPPQVEVQARHDEVVVRVISPINSHPVSPVIKALIEAQVSVVDSKLVTADEAVFHTFVIKQPQGPDQQLTKDKLIAAFSRQSNSLTGQLT 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1861 647 FunFam Transcription factor bHLH13 461 532 - -
Acco09g1861 647 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 56 244 IPR025610 -
Acco09g1861 647 Coils Coil 507 527 - -
Acco09g1861 647 MobiDBLite consensus disorder prediction 530 563 - -
Acco09g1861 647 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 468 517 IPR011598 GO:0046983
Acco09g1861 647 MobiDBLite consensus disorder prediction 448 479 - -
Acco09g1861 647 PANTHER MYC 43 634 IPR045084 GO:0003700|GO:0006355
Acco09g1861 647 MobiDBLite consensus disorder prediction 420 439 - -
Acco09g1861 647 Pfam Helix-loop-helix DNA-binding domain 472 518 IPR011598 GO:0046983
Acco09g1861 647 CDD bHLH_AtAIB_like 465 530 - -
Acco09g1861 647 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 471 532 IPR036638 GO:0046983
Acco09g1861 647 MobiDBLite consensus disorder prediction 532 562 - -
Acco09g1861 647 Gene3D - 461 531 IPR036638 GO:0046983
Acco09g1861 647 SMART finulus 474 523 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1861 Acco-ChrAcco09 35519498 35521441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1861 12 642 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 48.624 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco09g1861 bHLH-MYC_N 2.5e-55 CL0161