Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1858 ATGGCACATCTGGGGTGTAATCTCAGAGGCCCGACGAGTTCTCCGGCGGATACAGGTTTGGAAGATGACGATCTGTATACAGAGTTATGGAAATTATGTGCTGGGCCTCTGGTGGATGTTCCTCGTGCTGGGGAGAGAGTTTTTTACTTCCCTCAGGGTCACATGGAACAATTGCAGGCATCAACGAATCAGGAATTGAACCAACAAATTCCCCATTTCGACATTTCATCTAAGATTCTATGCCGTGTTATGCACATTCAGTTATTGGCGGAACCAGACACTGATGAAGTTTATGCTCGTATTACTTTGCTTCCAGAATCAGATCAAACTGAGCCTGCCAGCCCTGATCCATCTCCACCAGATACTGGGACGCAGGCTTTTCATTCATTTTGCAAAATACTAACAGCATCTGATACTAGCACGCATGGAGGTTTTTCAGTTCTTCGGAAGCATGCTAATGAGTGCTTGCCACAATTGGACATGACCCAAGCAACCCCTACTCAGGAGTTAGCAGCAAAGGATCTTCATGGGTTTGAGTGGAAATTTAAGCATATATTCAGAGGTCAACCAAGAAGACACTTGCTTACAACCGGCTGGAGTACATTTGTCACTTCCAAAAGGCTGGTAGCCGGAGATGCATTCGTGTTTTTGAGGGGAGAGAATGGAGAACTGAGAGTTGGTGTCCGGCGCCTTGCCCGGCAACAGAGTCCAATGCCTTCATCTGTGATATCAAGCCAGAGCATGCATCTTGGAGTGCTGGCCACTGCTTCCCATGCCGTTGCCACTCGTACCATGTTTGTAGTTTACTACAAACCAAGGACTAGACAGTATATTATTGGTTTAAACAAATATCTGGAGGCAATCGACAATAAGTTTACGGTTGGCATGCGCTTCAAGATGAGATTTGAGGGAGATGATTCACCTGAGAGAAGGTTTTCGGGAACTATTGTTGGCGTTGGCGATTTATCTACAGATTGGCTGGACTCAAAGTGGCGGTCATTGAAGGTACAATGGGATGAGCCTGCAACAATCCCAAGGCCAGAGAGGGTTTCTCCCTGGGAGATAGAACCTTTTGTTGCTTCTGCGCCTATAAATCTCGCACAACCAGCCGTAAAGAGCAAAAGATCTCGCCCTGCAGATGTTCCTTCTTCTGAAATGGTTTCCAATTCAGCTGCTTCAGCTTTCTGGTTTCATGGGTCATCCCAGTCCCATGAACTTGCACAATTAGGCGTCGCAACAGAAGCCCAAAGTAATGAAAACCAGGTTTTATGGAATGCAAGGCAGAACAACATAAATGGGCATGCTATGAACAACAGTAGCTCCTGCAACTCTAGAGTCCGGGTCGAAGGGCCATGGCCTTCATCACATTTGAACTGTTTTCCTGACCCCAAAAACAACAAGGCTGTTGCAGTTCAGTCTTCTATTTCTGGTTATCCTCCTCCTGGCTCTTCTTGGCCAAATGATTCTTCAGCTTATGATCAAGTTGAGAATGCGAAGAAATGTGAGAATCCTGTGGGGTGCCGGCTATTTGGTGTCAATTTGACAAACAACTCTAACAATGTTGCTCCTCCAGGGAAAGAATCAAGAGGCTGCACTGCTAGTCCCGGTGATTCCAAAGAACCTGTTCCTTTTGTTGCATGTGAAACTAAAACAAGTCCGAATCCCAATTGTTCCGTGTCCAAACAGGAGCAGAAGCAAGAAATGTCTAATGGTTCACCAAATAATGAGAGGCAGAGCAAGCAGGCTTCTTTACCATCCACCAGGACTCGCACAAAGGTACAAATGCAAGGAGTGGCTGTTGGTCGTGCTGTTGACTTGACTACGTTGGATGGTTACGAAAGTCTGATCGAAGAGCTTGAAAGGTTGTTCAGCATTAAAGGAGAGCTTCGTACGCAGAACAAATGGGCGGTTACTTTCACAGATGATGAGAATGACATGATGCTCGTGGGCGATGATCCGTGGCCGGAGTTTTGTAAAATGGTGAAGAGGATTATAATATATTCAAGCGAGGAAGTGAAGAAGATGAATGCAGTATGCCCAGTTCCTGCATCTTCATCAGAGGATGATGAAACTCTGATCACAGTGAATTCACAGAATAAGGATGAAAGTCAGTAA 2115 0.4572 MAHLGCNLRGPTSSPADTGLEDDDLYTELWKLCAGPLVDVPRAGERVFYFPQGHMEQLQASTNQELNQQIPHFDISSKILCRVMHIQLLAEPDTDEVYARITLLPESDQTEPASPDPSPPDTGTQAFHSFCKILTASDTSTHGGFSVLRKHANECLPQLDMTQATPTQELAAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGENGELRVGVRRLARQQSPMPSSVISSQSMHLGVLATASHAVATRTMFVVYYKPRTRQYIIGLNKYLEAIDNKFTVGMRFKMRFEGDDSPERRFSGTIVGVGDLSTDWLDSKWRSLKVQWDEPATIPRPERVSPWEIEPFVASAPINLAQPAVKSKRSRPADVPSSEMVSNSAASAFWFHGSSQSHELAQLGVATEAQSNENQVLWNARQNNINGHAMNNSSSCNSRVRVEGPWPSSHLNCFPDPKNNKAVAVQSSISGYPPPGSSWPNDSSAYDQVENAKKCENPVGCRLFGVNLTNNSNNVAPPGKESRGCTASPGDSKEPVPFVACETKTSPNPNCSVSKQEQKQEMSNGSPNNERQSKQASLPSTRTRTKVQMQGVAVGRAVDLTTLDGYESLIEELERLFSIKGELRTQNKWAVTFTDDENDMMLVGDDPWPEFCKMVKRIIIYSSEEVKKMNAVCPVPASSSEDDETLITVNSQNKDESQ 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1858 704 MobiDBLite consensus disorder prediction 549 593 - -
Acco09g1858 704 Pfam AUX/IAA family 565 671 IPR033389 -
Acco09g1858 704 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Acco09g1858 704 MobiDBLite consensus disorder prediction 1 20 - -
Acco09g1858 704 SMART B3_2 130 232 IPR003340 GO:0003677
Acco09g1858 704 Gene3D - 291 362 - -
Acco09g1858 704 FunFam Auxin response factor 583 676 - -
Acco09g1858 704 FunFam Auxin response factor 128 232 - -
Acco09g1858 704 MobiDBLite consensus disorder prediction 687 704 - -
Acco09g1858 704 MobiDBLite consensus disorder prediction 681 704 - -
Acco09g1858 704 FunFam Auxin response factor 291 362 - -
Acco09g1858 704 Gene3D - 127 231 IPR015300 -
Acco09g1858 704 Pfam B3 DNA binding domain 130 230 IPR003340 GO:0003677
Acco09g1858 704 ProSiteProfiles PB1 domain profile. 588 669 IPR000270 GO:0005515
Acco09g1858 704 Pfam Auxin response factor 256 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Acco09g1858 704 SUPERFAMILY CAD & PB1 domains 583 664 - -
Acco09g1858 704 SUPERFAMILY DNA-binding pseudobarrel domain 122 259 IPR015300 -
Acco09g1858 704 CDD B3_DNA 128 230 IPR003340 GO:0003677
Acco09g1858 704 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 676 IPR044835 GO:0003677|GO:0006355|GO:0009725
Acco09g1858 704 Gene3D - 584 676 - -
Acco09g1858 704 MobiDBLite consensus disorder prediction 516 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1858 Acco-ChrAcco09 35438954 35443315 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1858 25 675 B3 DNA Binding Superfamily AT4G23980 57.774 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Acco09g1858 AUX_IAA 1.1e-12 CL0072