Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1843 ATGGGCCAATATTGGGCTGAATTTATCCTAATAGCACAAAGGAGCCCATTTTCATCCCGTCGTCTCGCTGCGATCTCAATATTCAAGAGCTTTACACGAACGGAAACAAATTCGAGACTTTTCAGGCTTGTTGGTGGAATAGTTGCGAAGATGAGACCGGTTTTTGTTGGGAACTTCGAGTACGATACTCGTCAATCTGAGCTGGAACGCTTGTTCGCTAAGTATGGGAGGATAGAACGCGTTGACATGAAATCGGGTTTTGCATTTGTGTATTATGAGGATGAGCGTGATGCTGAAGATGCAATCCGTGCATTAGATAATTTTCCATTTGGTTATGACAAGCGAAGGCTGTCTGTAGAGTGGGCTCGGGGTGAACGTGGCCGTCATCGAGATGGGTCCAGAGCAAACCAGAAGCCCACGAAAACATTATTTGTGATTAACTTTGACCCAATTCGCACTAGAATTCGTGATATAGAAAGACACTTTGAACCATATGGGAAAGTTCTTCATGTTCGGATTCGTCGGAATTTTGCATTTGTGCAGTTTGAAACACAAGAAGATGCCACTAAAGCTCTTGAGTGCACACATATGAGCAAGATACTGGATAGAGTGGTTTCAGTGGAGTATGCTCTGAGGGATGATGATGAGAGGGGTGACAGATACTATGACAGCCCCAGAAGAGGAGGGGGTTATGGAAGATCACCCAGTCCAGTTGCTCGGAGGCGACCTAGTCCTGATTATGGTCGTCCACGCAGCCCTGTGTATGATAGGTACAATGGACCGGCATATGACAGACGTAGGAGTCCTGATTATGGCAGGCCTAGGAGTCCCGATTATGGCAGGGCGAGGAGTCCTGAATATGGCAGATACCGCAGCCGCTCACCAATCAGAAGGTCCAGGACTTGA 906 0.4702 MGQYWAEFILIAQRSPFSSRRLAAISIFKSFTRTETNSRLFRLVGGIVAKMRPVFVGNFEYDTRQSELERLFAKYGRIERVDMKSGFAFVYYEDERDAEDAIRALDNFPFGYDKRRLSVEWARGERGRHRDGSRANQKPTKTLFVINFDPIRTRIRDIERHFEPYGKVLHVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDDERGDRYYDSPRRGGGYGRSPSPVARRRPSPDYGRPRSPVYDRYNGPAYDRRRSPDYGRPRSPDYGRARSPEYGRYRSRSPIRRSRT 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1843 301 SUPERFAMILY RNA-binding domain, RBD 132 232 IPR035979 GO:0003676
Acco09g1843 301 FunFam Serine/arginine-rich splicing factor RS31 51 134 - -
Acco09g1843 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 141 212 IPR000504 GO:0003723
Acco09g1843 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 124 IPR000504 GO:0003723
Acco09g1843 301 MobiDBLite consensus disorder prediction 260 293 - -
Acco09g1843 301 Gene3D - 135 222 IPR012677 -
Acco09g1843 301 Gene3D - 49 134 IPR012677 -
Acco09g1843 301 SMART rrm1_1 53 120 IPR000504 GO:0003723
Acco09g1843 301 SMART rrm1_1 142 208 IPR000504 GO:0003723
Acco09g1843 301 MobiDBLite consensus disorder prediction 216 301 - -
Acco09g1843 301 CDD RRM2_AtRSp31_like 142 211 - -
Acco09g1843 301 SUPERFAMILY RNA-binding domain, RBD 51 133 IPR035979 GO:0003676
Acco09g1843 301 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 141 293 - -
Acco09g1843 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 110 IPR000504 GO:0003723
Acco09g1843 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 143 205 IPR000504 GO:0003723
Acco09g1843 301 FunFam Serine/arginine-rich splicing factor RS31 135 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1843 Acco-ChrAcco09 35307524 35310792 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1843 50 280 Eukaryotic Initiation Factors Gene Family AT4G34110 28.030 6.63e-10 58.2