Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1840 ATGATGGTAGTAGATGCATTGACTTCTGCCACTTCCGGTCCTACTACAGAAATTATTTCTCAGCTTATAGAATCTATTTTTGAGCTTGTAACCTGCGCTAGTGATGTCCTTGTGAAGAAGGATAGTTTTAAGGAACTTGCAGCTTACTTGGAAAGAATTGTACCCATCCTAAAAGAACTGAGGAATAAAAAAGTCAGTGATATTGAGACATTTAATCGCACCATCGACATATTGAATCATGAAATTAAAGAGGCAAAGAAACTGATTCAAGAATGGAGCAAGAGGAACAAGGTCTATCTCTTATTGAACTGCAGGTCTATCTCAAAGCGCTTAAAGAACAGTACAAGCGAGATCAGCCGTGCTCTTGCATTTATTCCTCTTGCTACCCAAGATCTTTCTTCTGGAATAGTTGAAGAAATTGAGAATCTCTGTGACAGTATGCAGAAAGCTGAGTTCAAGGCAGCCATAGCAGAAGAGCAGATTTTGGAGAAAATAGAGTCAGGGATAAATGAAAAGAATATGGACCGCTCTTATGCCAATAATTTGTTGATTCTCATTGCACAAGCTGTTGGCATAACAAATGAGAAGTCAACAATGAAGAAGGAACTGGAAGAATTCAAGAGTGAAGTTGAAAATGCCCGTCTAAGGAAGGACCTGGCTGAAGCTATACAAATGGATCAGATCATCGCTTTGCTTGAAAGGGCTGATGCAGCCACATCACCTAGGGAAAAAGAACTCAAATACTTTGCAAAACGAAAATCTCTTGGAAGTCAACCCTTAGATCCTCTTCAATCATTTTATTGCCCCATAACTCGAGAGGTCATGGTGGACCCGGTTGAAACTTCTTCAGGGCAGACATTTGAGAGAAATGCCATAGAAAAGTGGTTTGCAGACGGAAATAATATGTGTCCTCTGACTATGACTCCTTTAGATACATCAGTTTTGCGACCTAATAAAACCTTGAAACAATCAATAGAAGAATGGAAGGATCGAAATACTATGATTAGTATTGCTTCAATGAAAGAAAAAATCCAGTCAGGAGAGGATGAAGAAGTGCTGCATTGTCTGGGAACTCTGAAGGGATTGTGTGAAGAAAAAGATCAGCACAGAGAATGGATGGTAATGGAGAATTACTTACAAGTTCTTATCCAGGTTCTTGGCTCCAGAAACCGTGATGTAAGGAATGAAGCTCTTGTCATCCTTTCAATGTTGGCTAAGGATAGTGATGAGGCCAAGGAAAGACTTGCAAATGTTGATAATGCAATTGAATCAATTGTCCGTACTCTTGGACGTCGTGTGGCAGAAAGGAAATTGGCAGCAGCATTACTGTTGGAGTTATCCAAGCATGATAGGTTACGAGAACACATTGGAAAGGTTCAAGGTTGCATACTACTGTTAGTGACTATATCAAGCAGTGATGACAACCAAGCTGGCAGGGATGCTGCAGAGCTACTGGAGAATCTTTCATACTCGGATGAGAATGTTTTGCTGATGGCAAAGGCAAATTATTTCAAACATCTGTTGCAGCGCCTTTCCTCAGGACCAGACAACGTAAAATTGCTTATGGCTACAACTCTTGCAGAAATGGAGTTAACCGACCACAATAAAGAGTCTCTATTTGCAGGTGGCGTTCTGGATCCTCTTCTTCACTTGATCTCAGACGATGATCCTAAGTTGAAAACCATGGCCATTAGAGCTCTTCGTAACCTATCCAGTTTAAAGAAAAATGGACTGGAAATGATTCGACAAGGAGCAGTGCGACCATTATTTAGGCTTCTTTTCCAACGTAGCTTACCACCCTCAAGTTTGTGGGACCACGTCGCTGCCATAGTCATGCAACTTGCTGAGTCAACCATTGGTCAAGATACCCAGACACCAGTTTCATTATTTGAATCTGATGAAGATATTGTTAACCTCTTCACCTTAATTAGATTCTCAGGGCCTGAGGTGAAGCGAAACATTATCCAGACCTTTTATGCCTTGTGTCAATCCACATCAGCTTCATACATCAAGACCAAGCTAGTAGAGTGCTTTGCTGTTCAAGAACTGGTTCGGTTATGTGAGAACGAAAACCTTGATCTAAGAGCAAGTGCTGTGAAACTGTTGTCATTCTTGGTTGCAAGTTGTGATGAGGCAACCATTCGGCAGAATGTAAACCAGAAGAGTTGTGAGAATTTAGTACGGATCCTTGGATCTTCTTCAGACGAAGATGAACCTGCTTCTGCTATGGGCATAATATGCCATCTTCCAGAAATTCCCGAGATCTCTCAATGGCTTCTTGATGATGGTGTACTGCGCATCATTTATAAGTATATCCAAGAAGGGAAAGACAGAGATCTCCAAAAGAATAACTTGGTAGAGAATTCTGTGGGCGCCCTTCGTCGTTTCACAGTTCCAGAAAACTTGGAGTGGCAAAAAAGCGCAGCCGAAACTGGTATTATACCTGTTTTAGTACAGTTGCTTGAATGTGGAACCACATTGGCAAAACAACGTTCAGCATTGTGTCTTAGTCAATTTTCAAAGAGTTCAGTTGTGCAGAGCAAGCCAATTTCCAAGCACAAGGGACTCTGGTGCTTCTCAGCTCCTGCAGGAATCGGCTGTGAGGTTCATGGAGGAATCTGTTCTGTCAAATCTTCATTTTGCCTTGTAGAGGCTGATGCGGTGTTTCCTCTAACAAGGACTCTGTGGGATTCTGATCCCGGAGTTTGTGAGGCTTCTTTGGATGCACTCCTGACTTTGATTGAAGGTGAGAGACTGCAAAATGGTACTAAAGTGCTTGACTCGGCAAATGCCATACCGGCAATGATAAAATTTCTCAGTTCATCATCCCCTGGATTGCAGGAAAAATCTCTTAATGCTTTGGAGAGGATTTTTCGGTTAATCGAGTACAAACAGAAGTATGGAGCCTCAGCTCAAATGCCCCTAGTTGACTTAACTCAGCGCGGTAATAGTAGCATAAGATCGATGTCAGCTAGAATATTGGCACATCTAAATGTGCTTCATGATCAGTCTTCTTATTTCTGA 3024 0.4163 MMVVDALTSATSGPTTEIISQLIESIFELVTCASDVLVKKDSFKELAAYLERIVPILKELRNKKVSDIETFNRTIDILNHEIKEAKKLIQEWSKRNKVYLLLNCRSISKRLKNSTSEISRALAFIPLATQDLSSGIVEEIENLCDSMQKAEFKAAIAEEQILEKIESGINEKNMDRSYANNLLILIAQAVGITNEKSTMKKELEEFKSEVENARLRKDLAEAIQMDQIIALLERADAATSPREKELKYFAKRKSLGSQPLDPLQSFYCPITREVMVDPVETSSGQTFERNAIEKWFADGNNMCPLTMTPLDTSVLRPNKTLKQSIEEWKDRNTMISIASMKEKIQSGEDEEVLHCLGTLKGLCEEKDQHREWMVMENYLQVLIQVLGSRNRDVRNEALVILSMLAKDSDEAKERLANVDNAIESIVRTLGRRVAERKLAAALLLELSKHDRLREHIGKVQGCILLLVTISSSDDNQAGRDAAELLENLSYSDENVLLMAKANYFKHLLQRLSSGPDNVKLLMATTLAEMELTDHNKESLFAGGVLDPLLHLISDDDPKLKTMAIRALRNLSSLKKNGLEMIRQGAVRPLFRLLFQRSLPPSSLWDHVAAIVMQLAESTIGQDTQTPVSLFESDEDIVNLFTLIRFSGPEVKRNIIQTFYALCQSTSASYIKTKLVECFAVQELVRLCENENLDLRASAVKLLSFLVASCDEATIRQNVNQKSCENLVRILGSSSDEDEPASAMGIICHLPEIPEISQWLLDDGVLRIIYKYIQEGKDRDLQKNNLVENSVGALRRFTVPENLEWQKSAAETGIIPVLVQLLECGTTLAKQRSALCLSQFSKSSVVQSKPISKHKGLWCFSAPAGIGCEVHGGICSVKSSFCLVEADAVFPLTRTLWDSDPGVCEASLDALLTLIEGERLQNGTKVLDSANAIPAMIKFLSSSSPGLQEKSLNALERIFRLIEYKQKYGASAQMPLVDLTQRGNSSIRSMSARILAHLNVLHDQSSYF 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1840 1007 Pfam Armadillo/beta-catenin-like repeat 534 572 IPR000225 GO:0005515
Acco09g1840 1007 ProSiteProfiles U-box domain profile. 261 335 IPR003613 GO:0004842|GO:0016567
Acco09g1840 1007 Coils Coil 68 95 - -
Acco09g1840 1007 Coils Coil 189 223 - -
Acco09g1840 1007 SMART Ubox_2 265 328 IPR003613 GO:0004842|GO:0016567
Acco09g1840 1007 Coils Coil 140 160 - -
Acco09g1840 1007 Pfam U-box domain 266 332 IPR003613 GO:0004842|GO:0016567
Acco09g1840 1007 CDD MLKL_NTD 20 130 - -
Acco09g1840 1007 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 16 1007 - -
Acco09g1840 1007 CDD RING-Ubox_PUB 266 315 IPR045210 -
Acco09g1840 1007 SUPERFAMILY ARM repeat 534 852 IPR016024 -
Acco09g1840 1007 SUPERFAMILY ARM repeat 339 594 IPR016024 -
Acco09g1840 1007 SMART arm_5 801 841 IPR000225 GO:0005515
Acco09g1840 1007 SMART arm_5 532 572 IPR000225 GO:0005515
Acco09g1840 1007 SMART arm_5 875 915 IPR000225 GO:0005515
Acco09g1840 1007 SMART arm_5 408 448 IPR000225 GO:0005515
Acco09g1840 1007 SMART arm_5 366 406 IPR000225 GO:0005515
Acco09g1840 1007 SMART arm_5 667 707 IPR000225 GO:0005515
Acco09g1840 1007 SMART arm_5 919 959 IPR000225 GO:0005515
Acco09g1840 1007 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 335 IPR013083 -
Acco09g1840 1007 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 543 585 IPR000225 GO:0005515
Acco09g1840 1007 Gene3D - 434 628 IPR011989 -
Acco09g1840 1007 Gene3D - 336 433 IPR011989 -
Acco09g1840 1007 SUPERFAMILY ARM repeat 881 998 IPR016024 -
Acco09g1840 1007 SUPERFAMILY RING/U-box 253 333 - -
Acco09g1840 1007 Gene3D - 14 130 IPR036537 GO:0007166
Acco09g1840 1007 Gene3D - 634 856 IPR011989 -
Acco09g1840 1007 Gene3D - 874 1005 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1840 Acco-ChrAcco09 35271474 35278538 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1840 264 1007 U-box Gene Family AT1G76390 29.130 3.27e-63 228