Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1829 ATGTCGGCCAATTATAGTGAATTCTCTCATTCTGCAGCAGCAGAAACATACAACAGCACCACACCAACTTCTTCTTCATCATCATCACCAACAAGAACTTGGAGTATCAGGAAGAAGGATAGCAGCAGCAAGAAAAGGTTCAGTAATGATCAAATCAAGTTATTAGAGTCCATTTTTGAGACAGAGTCCAAGCTTGACCACGCAAAAAAATTGCAGCTTGCTTCTGAACTTGGCTTGCAGCCTCGCCAGGTAGCCATATGGTTCCAGAACAGAAGAGCTCGATCCAAATCCAAGCACATCCAACGTTCCTACAATCTACTTCAAGAAAGTTATGATGATTTGGCTTCCAAATTTGAAGCCCTCAAGAAGGAGAATCATGCATTACTGCAAGAGTTGCAGAAGCTGAAAGATTTGGAAGATCAGAACTTCTGTTGTAAGAAAGTGAGAGGCGAGAATTTGATGAACAGAGAGTGTGGTGAGGCAGAGGTGAAGAAGAGTAGTTTATTCGTGGAAAGACCAGAAAAGATACTTGGGGTTCTTTCAGATGATGATAGGAGCTTAAGGACAGAATATTTTGGGCTTGAAGAAGAAGAACCTACGATTCTAAACTCACAAGAAGTCTGGAGAAATCTTGAATCTACTGATGAACTCGTAGCCCAGTCTGATGGCAGTGCTTATCAATGGGGGGACTTTTGGTCCTGA 702 0.4217 MSANYSEFSHSAAAETYNSTTPTSSSSSSPTRTWSIRKKDSSSKKRFSNDQIKLLESIFETESKLDHAKKLQLASELGLQPRQVAIWFQNRRARSKSKHIQRSYNLLQESYDDLASKFEALKKENHALLQELQKLKDLEDQNFCCKKVRGENLMNRECGEAEVKKSSLFVERPEKILGVLSDDDRSLRTEYFGLEEEEPTILNSQEVWRNLESTDELVAQSDGSAYQWGDFWS 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1829 233 MobiDBLite consensus disorder prediction 1 47 - -
Acco09g1829 233 Pfam Homeobox associated leucine zipper 98 138 IPR003106 GO:0006355|GO:0043565
Acco09g1829 233 PRINTS Lambda-repressor HTH signature 78 94 IPR000047 GO:0003677
Acco09g1829 233 PRINTS Lambda-repressor HTH signature 69 78 IPR000047 GO:0003677
Acco09g1829 233 Coils Coil 104 141 - -
Acco09g1829 233 SUPERFAMILY Homeodomain-like 18 98 IPR009057 -
Acco09g1829 233 Pfam Homeodomain 43 96 IPR001356 GO:0003677
Acco09g1829 233 Gene3D - 35 105 - -
Acco09g1829 233 MobiDBLite consensus disorder prediction 1 36 - -
Acco09g1829 233 ProSitePatterns 'Homeobox' domain signature. 73 96 IPR017970 GO:0000981|GO:0006355
Acco09g1829 233 ProSiteProfiles 'Homeobox' domain profile. 38 98 IPR001356 GO:0003677
Acco09g1829 233 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 38 174 IPR045224 GO:0003700
Acco09g1829 233 CDD homeodomain 44 99 IPR001356 GO:0003677
Acco09g1829 233 SMART HOX_1 40 102 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1829 Acco-ChrAcco09 35146242 35147052 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1829 27 233 Homeobox Transcription Factor Family AT2G46680 38.934 7.84e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Acco09g1829 Homeodomain 1.7e-17 CL0123