Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1780 ATGGGGGATGGGAGTATTAGGGTTTCAGGGAAAGTTGAGGATGACCCAGTAGTTCCTCGCTCCTCTCCTTCCTACTGGCTGGATGCTGTTGAGGACATTTCCTGCGATCTCATTCACTTTGATGATAGGTCCATAGTCTCAGAACAGGTCGATAACAATTTGATACAGGATGGGCTGGTTAGTGATTTCTTCGGCGGCATTGATAGCATTCTTGACAGTATTAAGAACGGCAGTGGCCTCCCTGTGCCCCCTGAGACTGGAAGTGAAAACAAAGACTTATCATTGGCAGTGCAAGCCGAAATCTCCGATCAGAAAGATAATATTGCGAAGAATGGGTTGGCTGGTGAAAAACATGGTCGTACTGTTGAAGTGTGTGAGCGTTCAGAAGCTGAAAGTAATGGGTATAAAGTATCTAATGGCAATGAAGGGGGAGCTTTGGGCGATTCCAAGGAAAATGGAGATGGTGATTTATCTAGGGAGCATCACGTGGATGGTGAAGAAAGATTTGGCAAGAGGGCTCGGCTTGGCAGTTATAAGAATGAGAGGCTTTATCCTGGCAGAGGGAATTACCAACCCAAGGAGAGGGAGAGGGGTCCTAATAGAAAGAGGCCACGGGAGTGGGATGAGGTTGATAGGAAGGAAAAAGATAGTTTGAGGAGAAGAGAAAATTTAAATGGTTGTGGTAGGAGAGATGTTAGAGATAGGGATTGGAGAGATAGAGAAAGGGGTTACTGGGAGAGGGACAAGTCAGGTTCCCATGACATGGTCTTTCGCTTGGGCTCTTGGGAAGCTGATCGCCATCGAGAAGGTAAGGTAGCTAATGACGTTAAACAAGAATGCAATGGAAAGACTGAGACTAAAACTGAGGAGCCAAAGGAGAGAGTTCCTGAGGAAAAGGCTAGAAAGTACCAGTTAGATGTTCTTGAGCAGGCAAAGCAGAGAAATACTATAGCTTTTCTTGAAACTGGGGCAGGGAAGACCCTCATTGCTGTTCTTCTCATGAAAAGTATTCATGAAAGTTTACAAAAGCATAATAAAAAAATGCTTGCCGTGTTCTTAGTTCCCAAAGTACCACTTGTTTATCAGCAAGCAGAAGTAATTCGAGAGCGAACTGGCTACCAAGTGGGTCACTACTGTGGTGAAATGGGACAGGACTTCTGGGATGCTCGAAGGTGGCAACGTGAATTTGAAACAAAACAGGTTCTAGTCATGACAGCTCAAATTCTTTTGAACATTCTGAGGCACAGCATAATAAAAATGGAAACAATCAATCTCCTGATTCTGGATGAGTGCCATCATGCTGTGAAGAAACATCCATATTCACTGGTGATGTCTGAGTTCTATCATACAACACCCAAAGAGAAGAGACCGTCTGTATTTGGAATGACTGCTTCTCCTGTTAACTTGAAAGGTGTATCCAGCCAAGTGGATTGTGCAATAAAAATTCGGAATCTTGAAAGTAAGCTAGATTCTGTAGTTTGTACCATCAAAGATCGTAAGGAGTTGGAGAAGCATGTACCAATGCCTTCTGAAGTTGTTGTGGAGTATGATAAAGCAGCCAATTTGTGTTATCTTCATGAGCAGATAAAGCAAATGGAAGTTGAAGTTGAAGAAGCTGCAAAATCAAGTTCAAGAAGAAGTAAATGGCAGTTCATGGGAGCTAGAGATGCAGGAGCCAAAGAAGAGCTCCGTCAAGTATATGGTGTTTCTGAAAGAACAGAAAGTGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTATCAATTATGCACTTGGTGAACTGGGTCAGTGGTGTGCTTATAAGGTTGCACATTCTTTTCTGTCGGCTTTGCAAAATGATGAGAGGGCAAACTACCAACTTGATGTCAAGTTTCAGGAATCCTATCTGAATAAAGTTGTGTCTCTTCTACAATGTCAACTGTCAGAGGGTGCAGCGTCTGAAAAGAATGCTGGAGCTTCTGACTCAGAATGTGGTAAGGCACAGGGTGGTTCTGAACCTGATGAGATTGAGGAAGGGGAGCTTCCAGACAGTCATGTTGTCTCTGGAGGGGAGCATGTGGATGTCATTATTGGAGCTGCTGTGGCGGATGGCAAGGTGACCCCTAAGGTTCAGGCTCTGATCAAAATACTTCTCAAGTATCAGCATACAGATGACTTCCGTGCAATCATCTTTGTTGAGCGTGTTGTGTCTGCGTTAGTTCTACCCAAGGTTTTTGTGGAGCTTCCATCTCTGAGTTTTGTTAAGTGTGCGAGCTTGATTGGCCACAACAATAGTCAAGAAATGAGAACCTCACAGATGCAGGATACAATTGCTAGGTTCCGTGATGGACGAGTTACATTATTAGTTGCCACCAGTGTTGCTGAAGAAGGACTTGATATACGGCAATGCAATGTTGTTATCCGCTTTGACCTTGCGAAGACTGTTTTGGCATACATTCAATCTAGAGGGCGTGCCAGAAAGCCTGGGTCTGACTATATCTTGATGGTTGAGAGGGGGAACTTGTCGCATGAAGCATTTCTGAAGAATGCCAGGGATAGTGAGGAGACTTTGCGGAGAGAAGCAATAGAGAGAACAGACCTAAGTCATCTTAAAGACACTTCAAGGTTGATTTCAGTAGATACAAGACCAGGAACTGTTTACCAGGTGGAGTCAACTGGTGCAGTTGTGAGCTTAAATTCTGCCGTTGGTCTTATCCACTTCTACTGCTCTCAGCTACCTAGTGACAGATATTCAATTCTTCGTCCAGAGTTTATAATGGAGAAGCATGAACAACCAGAAGGTCCCACTGAATATTCTTGCAAGCTTCAATTGCCGTGTAATGCACCATTCGAAAATCTTGAGGGTCCCATATGCAGTTCAATGCGCCTTGCACAACAGGCTGTTTGTCTGGCTGCTTGTAAGAAGCTGCATGAGATGGGAGCGTTCACTGACATGCTATTGCCAGACAAAGGAAGTGGAGAAGACAAAGAAAAGGCTGAACAAAATGATGAAGGAGATCCACTTCCAGGGACTGCCAGACACAGAGAGTTTTATCCTGAAGGTGTGGCGGATGTACTAAAGGGAGAATGGATCTTATCTGGAAAAGATGCGTGCAGCAATTCCAAAGTGCTTCATCTTTATATGTATGCTGTTATGAGCGAAAACATAGGCCATTCAAAGGATCCATTCTTGACTCAAGTTTCTGATTTTGCAATACTTTTTGGCAATGAGCTGGATGCAGAGGTGTTATCGATGTCGATGGATCTATTTATCGCACGAACCATGACTACAAAGGCATCCCTTGTCTTTAGAGGGTCAATAGTTATTTCTGAGAGTCAGTTGGCATCCTTAAAAAGCTTTCATGTAAGATTAATGAGCATTGTCCTGGATGTGGATGTTGAACCTTCCACTACTCCTTGGGATTCTGCAAAAGCATATTTATTTGTTCCAATGGTTAGCGATAAGTCTGTAGATCCTATGAACCAAATTGATTGGCACCTGGTTGAGACAGTAATTGAAACAGATGCATGGAAAAATCCACTTCAGAAGGCTCGACCAGATGTTTATCTTGGCACGAATGAGAGAACTTTAGGTGGAGATAGAAGGGAATATGGATTTGGGAAATTGCGTAATGGCATGGCTTTTGGGCAAAAACCACACCCAACCTATGGAATCAGAGGAGCTGTTGCGCAATTTGATATAGTAAAAGCTTCAGGATTGGTTCCTAATAGACAAGCCGTGCCAATGCAAAAGCATAATAGTAAGATTGTTCAAGGGAAATTGATGTTGGCAGATACCTGTACTCATGCAGAGGACCTGGTAGGTAGGATAGTTACAGCTGCTCACTCAGGGAAGAGGTTTTTTGTTGATTCAATACGCTATGATATGACTGCAGAGAACTCTTTTCCTAGGAAAGAAGGCTATCTCGGTCCTCTGGAGTACAGCTCATATGCTGATTACTACAAACAAAAGTATGGTGTTGATTTAATTTACAAGCATCAGCCTCTTATAAGAGGAAGGGGTGTTTCATACTGCAAGAATCTTTTATCCCCACGATTTGAACACAGTGAAACACATGAAGCCGAATCTGAAGAGGCTCTTGACAAAACTTATTACGTCTTTCTTCCTCCTGAGCTATGCCTTGTACACCCCCTGTCTGGATCACTTGTTCGTGGGGCCCAGAGGCTGCCTTCAATAATGAGGAGGGTTGAAAGTATGCTTCTGGCAATTCAACTTAAGAATATGATAAATTATCCAGTCCAGTCTTCCAAGATATTGGAGGCCTTGACTGCTGCTTCCTGCCAGGAGACATTCTGCTATGAAAGGGCAGAGCTTCTAGGAGATGCATATCTCAAATGGGTTGTTAGTAGATTTCTTTTCCTAAAATACCCACAGAAACATGAAGGCCAGCTTACTAGGATGAGGCAACAAATGGTCAGTAACATGATATTATATCAATATGCGTTGAGCAAAGGGCTTCAATCGTATATTCAAGCAGATCGCTTTGCTCCATCCAGATGGGCAGCTCCAGGGGTGCTGCCTGTGTTTGATGAGGATACCAGAGATGGAGAGTCATCTTTATTTGATCAGGAGGGATTGATTTCAAAAACGGAGAAGATGGATCGCCTTTCTGATGGATTTGAGGATGATGAAATGGAAGATGGTGAGCTTGAGAGCGATTCAAGTTCTTATAGAGTCCTATCCAGCAAGACACTTGCCGATGTAGTAGAAGCTTTGATTGGGGTGTACTATGTTGAAGGTGGGAAGAATGCTGCAAATCATCTTATGAAATGGATTGGCATTCAGATAGAGTTTGATCCTGATAAGATGGAGTGTACAAGGAAGCTAAATACTGTTCCTGAGAGCATACTTCGGAGTGTTGACTTTGATGCTCTGGAGGGCGCTCTGAATATCAAGTTTAGAGACAAGGGGCTGCTTATAGAAGCAATAACTCATGCATCAAGACCATCCTCTGGAGTATCCTGTTATCAGCGGTTAGAGTTTGTTGGTGATGCTGTCTTGGATCATCTAATTACTAGGCACTTGTTTTTCACTTATACAGATTTACCACCGGGACGTCTGACTGACCTTCGGGCTGCTGCTGTAAACAATGAAAACTTTGCACGTGTTGCAGTTAAACACAATCTTCATGTCCATCTTCGACATGGGTCCAGCGCCCTAGAAAAACAGATTACAGAATTTGTGAAGGAAGTTCAAGAAGAGCTGTTAAAGCCAGGTTTTAACTCCTTTGGCTTGGGAGACTGCAAAGCACCCAAAGTCCTTGGTGACATTGTTGAATCTATTGCTGGTGCCATTTTTCTTGACAGTGGACGAGAGACTTCCGTTGTTTGGAAGGTTTTTCAGCCTCTTCTGCATCCTATGGTGACGCCGGAGACTCTGCCAATGCATCCTGTGCGGGAGCTACAAGAACGATGCCAGCAGCAGGCAGAAGGCTTAGAATATAGAGCCTGTCGAATAGGAAATTTGGCTACTGTTGAAGTTTTCATTGATGGCGTGCAAGTCGGGGTTGCTCAAAATCCTCAAAAGAAAATGGCACAGAAATTAGCTGCCAGAAATGCCCTTGCTGCATTGAAAGAGAAAGAGGAGGAGGTAGCTAAATCTAAGGAGAAGGATGAAGAAAATGGTAAGAAGAAGAAGAATGGAAACCAGACATTCACCAGACAAACATTAAACGATATCTGCTTGCGGAGAAATTGGCCTATGCCATTCTACCGGTGTGTGAACGAGGGTGGTCCAGCACATGCAAAGAGGTTTACATTTGCAGTTCGTGTCAATACTACTGATAGAGGATGGACAGATGAATGTATTGGAGAGCCAATGCCAAGCGTGAAGAAAGCCAAGGATTCTGCTGCTGTTCTTCTCTTAGAACTTCTAAATAAATTGTACTCCTAA 5895 0.4349 MGDGSIRVSGKVEDDPVVPRSSPSYWLDAVEDISCDLIHFDDRSIVSEQVDNNLIQDGLVSDFFGGIDSILDSIKNGSGLPVPPETGSENKDLSLAVQAEISDQKDNIAKNGLAGEKHGRTVEVCERSEAESNGYKVSNGNEGGALGDSKENGDGDLSREHHVDGEERFGKRARLGSYKNERLYPGRGNYQPKERERGPNRKRPREWDEVDRKEKDSLRRRENLNGCGRRDVRDRDWRDRERGYWERDKSGSHDMVFRLGSWEADRHREGKVANDVKQECNGKTETKTEEPKERVPEEKARKYQLDVLEQAKQRNTIAFLETGAGKTLIAVLLMKSIHESLQKHNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFETKQVLVMTAQILLNILRHSIIKMETINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAANLCYLHEQIKQMEVEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAHSFLSALQNDERANYQLDVKFQESYLNKVVSLLQCQLSEGAASEKNAGASDSECGKAQGGSEPDEIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQHTDDFRAIIFVERVVSALVLPKVFVELPSLSFVKCASLIGHNNSQEMRTSQMQDTIARFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLKNARDSEETLRREAIERTDLSHLKDTSRLISVDTRPGTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMEKHEQPEGPTEYSCKLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEDKEKAEQNDEGDPLPGTARHREFYPEGVADVLKGEWILSGKDACSNSKVLHLYMYAVMSENIGHSKDPFLTQVSDFAILFGNELDAEVLSMSMDLFIARTMTTKASLVFRGSIVISESQLASLKSFHVRLMSIVLDVDVEPSTTPWDSAKAYLFVPMVSDKSVDPMNQIDWHLVETVIETDAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRNGMAFGQKPHPTYGIRGAVAQFDIVKASGLVPNRQAVPMQKHNSKIVQGKLMLADTCTHAEDLVGRIVTAAHSGKRFFVDSIRYDMTAENSFPRKEGYLGPLEYSSYADYYKQKYGVDLIYKHQPLIRGRGVSYCKNLLSPRFEHSETHEAESEEALDKTYYVFLPPELCLVHPLSGSLVRGAQRLPSIMRRVESMLLAIQLKNMINYPVQSSKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMILYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTRDGESSLFDQEGLISKTEKMDRLSDGFEDDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIQIEFDPDKMECTRKLNTVPESILRSVDFDALEGALNIKFRDKGLLIEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHNLHVHLRHGSSALEKQITEFVKEVQEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRETSVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYRACRIGNLATVEVFIDGVQVGVAQNPQKKMAQKLAARNALAALKEKEEEVAKSKEKDEENGKKKKNGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNKLYS 1964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1780 1964 MobiDBLite consensus disorder prediction 188 216 - -
Acco09g1780 1964 Pfam PAZ domain 1263 1398 IPR003100 GO:0005515
Acco09g1780 1964 CDD RIBOc 1417 1600 IPR000999 GO:0004525|GO:0006396
Acco09g1780 1964 Pfam Dicer dimerisation domain 895 983 - -
Acco09g1780 1964 MobiDBLite consensus disorder prediction 983 1008 - -
Acco09g1780 1964 Gene3D - 1892 1962 - -
Acco09g1780 1964 PANTHER DICER-RELATED 1256 1868 - -
Acco09g1780 1964 SMART ultradead3 296 499 IPR014001 -
Acco09g1780 1964 CDD SF2_C_dicer 700 830 - -
Acco09g1780 1964 MobiDBLite consensus disorder prediction 981 1008 - -
Acco09g1780 1964 ProSiteProfiles PAZ domain profile. 1264 1378 IPR003100 GO:0005515
Acco09g1780 1964 SUPERFAMILY RNase III domain-like 1394 1600 IPR036389 GO:0004525|GO:0006396
Acco09g1780 1964 SUPERFAMILY PAZ domain 1260 1378 IPR036085 GO:0005515
Acco09g1780 1964 Gene3D paz domain 1258 1376 - -
Acco09g1780 1964 Gene3D - 294 538 IPR027417 -
Acco09g1780 1964 MobiDBLite consensus disorder prediction 1862 1881 - -
Acco09g1780 1964 FunFam Endoribonuclease dicer-like 1 890 991 - -
Acco09g1780 1964 Pfam Type III restriction enzyme, res subunit 306 466 IPR006935 GO:0003677|GO:0005524|GO:0016787
Acco09g1780 1964 CDD DSRM_DCL_plant 1892 1953 - -
Acco09g1780 1964 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 347 833 IPR027417 -
Acco09g1780 1964 SMART PAZ_2_a_3 1241 1402 IPR003100 GO:0005515
Acco09g1780 1964 SUPERFAMILY dsRNA-binding domain-like 1753 1862 - -
Acco09g1780 1964 FunFam Endoribonuclease dicer-like protein 295 535 - -
Acco09g1780 1964 Gene3D - 693 858 IPR027417 -
Acco09g1780 1964 MobiDBLite consensus disorder prediction 127 216 - -
Acco09g1780 1964 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1797 1860 IPR014720 -
Acco09g1780 1964 MobiDBLite consensus disorder prediction 1 21 - -
Acco09g1780 1964 MobiDBLite consensus disorder prediction 1862 1884 - -
Acco09g1780 1964 Pfam Ribonuclease III domain 1658 1771 IPR000999 GO:0004525|GO:0006396
Acco09g1780 1964 Pfam Ribonuclease III domain 1435 1582 IPR000999 GO:0004525|GO:0006396
Acco09g1780 1964 CDD RIBOc 1639 1794 IPR000999 GO:0004525|GO:0006396
Acco09g1780 1964 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 895 990 IPR005034 GO:0016891
Acco09g1780 1964 ProSiteProfiles Ribonuclease III family domain profile. 1421 1582 IPR000999 GO:0004525|GO:0006396
Acco09g1780 1964 ProSiteProfiles Ribonuclease III family domain profile. 1623 1771 IPR000999 GO:0004525|GO:0006396
Acco09g1780 1964 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1886 1959 - -
Acco09g1780 1964 MobiDBLite consensus disorder prediction 273 298 - -
Acco09g1780 1964 Gene3D Ribonuclease III domain 1618 1792 IPR036389 GO:0004525|GO:0006396
Acco09g1780 1964 Gene3D Ribonuclease III domain 1400 1596 IPR036389 GO:0004525|GO:0006396
Acco09g1780 1964 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 307 484 IPR014001 -
Acco09g1780 1964 Gene3D - 1795 1873 - -
Acco09g1780 1964 ProSitePatterns Ribonuclease III family signature. 1658 1666 IPR000999 GO:0004525|GO:0006396
Acco09g1780 1964 FunFam Endoribonuclease dicer-like protein 1400 1594 - -
Acco09g1780 1964 FunFam endoribonuclease Dicer homolog 1 1892 1961 - -
Acco09g1780 1964 SMART helicmild6 736 822 IPR001650 -
Acco09g1780 1964 FunFam Endoribonuclease Dicer 1 1258 1376 - -
Acco09g1780 1964 Coils Coil 1851 1875 - -
Acco09g1780 1964 FunFam Endoribonuclease dicer-like 1 1618 1792 - -
Acco09g1780 1964 SMART DRBM_3 1887 1960 IPR014720 -
Acco09g1780 1964 SMART DRBM_3 1798 1859 IPR014720 -
Acco09g1780 1964 MobiDBLite consensus disorder prediction 648 679 - -
Acco09g1780 1964 Gene3D Dicer dimerisation domain 890 993 IPR038248 -
Acco09g1780 1964 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1886 1961 IPR014720 -
Acco09g1780 1964 CDD DEXHc_dicer 299 498 - -
Acco09g1780 1964 Pfam Helicase conserved C-terminal domain 703 820 IPR001650 -
Acco09g1780 1964 SMART riboneu5 1638 1794 IPR000999 GO:0004525|GO:0006396
Acco09g1780 1964 SMART riboneu5 1417 1602 IPR000999 GO:0004525|GO:0006396
Acco09g1780 1964 SUPERFAMILY RNase III domain-like 1622 1793 IPR036389 GO:0004525|GO:0006396
Acco09g1780 1964 MobiDBLite consensus disorder prediction 152 178 - -
Acco09g1780 1964 SUPERFAMILY dsRNA-binding domain-like 1890 1960 - -
Acco09g1780 1964 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 707 867 IPR001650 -
Acco09g1780 1964 FunFam Endoribonuclease dicer-like 1 694 856 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1780 Acco-ChrAcco09 34511901 34522416 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1780 719 862 Eukaryotic Initiation Factors Gene Family AT5G11200 29.252 3.52e-07 53.1