Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1779 ATGGAATTGCTGATGCAAGATGTCAAAATGCATTCTGATGATAAGGAAGAAGACGAGGAGGAGGAGGAAGAAGAAGAAGAAGACGAAGCAGAGATTGTTAGAGAGGAAAGCAGCAGCAACAGTATGAGTAATAATTACCTTCATTTCTCGCCAAATTACGAAACTAGTACTCATCCTCGTCTTCATCAAAATTCATGGTTGGGGCTTCATCATGATCACCATCACTCTTCAGATGCTGCTACCACTACCATCGAATCTCACAATTCATCTCCCCGATTAGGGTTAGCATCAGCACCGACCACCAATTTGACCGCCAATCACAGAAGACCGGACCTCATGGAGTTGTCTCTCGGAGGAATTAGAATCGGAAAAGGCGGTGAAGAACAAGAAGAAGGTAATATCCAAGGAGGAGGTAGCGGCGGCTGCGGCGGTGAGGATGTTGGTGGTGTTGCTATTGAGAAAGAGCACATGTTCGATAAAGTGGTGACTCCGAGTGACGTAGGCAAGCTCAACCGCCTCGTGATACCAAAGCAACACGCAGAGAAGTACTTCCCTCTGGATTCATCCTCCAACGAGAAAGGACTGCTGTTGAATTTTGAGGACCGGAACGGCAAGCTATGGAGGTTCCGGTACTCATACTGGAATAGTAGCCAGAGCTATGTCATGACCAAAGGTTGGAGCCGCTTCGTCAAGGAGAAGAAGCTCGACGCCGGAGACATTGTCTCGTTCCACCGCGGCGCCGGCGAGTCGTATCGGCACCGGTTGTACATAGATTGGAGGCGAAAACCTGATCACCACGGCGCACTCGGCGGCCCTGATCCCGGCCTGTTTGCACCTTTTCTTCTTCATCATCCGAATCAGTATCATCCGAACTCGCCGACGACGCAATTTTCTCATTACTCTATCAGATGGGGCGGCCAATTGTTCTCGCTCCCCTCTCCGGCGCTTCCGCCGCGACAGGTGAACCATAGTAATATGTTTCCCTTATATCATCATCAACAGCAACAAGAACGACATCATCAATCAAGGCAGTTCCAAGTCCATCATCATAATGCGATGAATTCGAGATCTGCTGGTTCGATGTATTCAAACTTGATAGGGCAACAAGAAGTAAGAAATGTTCCGATGATTATAGATTCTGTTCCAGTTGATCATTATCATTCTCATCAAAACTATTACCATGGAAAAAATAGTAGTACTGCTACTAATAATACTGCTACTGCTAGTAAAAGGCTTAGGCTATTTGGGGTGAACATGGAGTGTGCTTCTTCTTCATCACCATCAGTAGTGGAAGAATCCAGATGTTGTAATGTGACAGCAATGGCTAATCCATCAATTTCATCTTCGTCTTCTTCTATTATCCCACCACCTCTTCATCAGTATCTGAGGGTACCCCATGAGGATCGAATTTCTTCGTCGTCGTCGGCGGCGTTGTTATCATCAGCAAGATTTCAGAGTAGTCATCATCATCAGAAAGGGGAAACTTCGATGCCTTTTGATTTAGATCCCTCTTTGCATTACAGGCAGTGA 1530 0.4647 MELLMQDVKMHSDDKEEDEEEEEEEEEDEAEIVREESSSNSMSNNYLHFSPNYETSTHPRLHQNSWLGLHHDHHHSSDAATTTIESHNSSPRLGLASAPTTNLTANHRRPDLMELSLGGIRIGKGGEEQEEGNIQGGGSGGCGGEDVGGVAIEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRGAGESYRHRLYIDWRRKPDHHGALGGPDPGLFAPFLLHHPNQYHPNSPTTQFSHYSIRWGGQLFSLPSPALPPRQVNHSNMFPLYHHQQQQERHHQSRQFQVHHHNAMNSRSAGSMYSNLIGQQEVRNVPMIIDSVPVDHYHSHQNYYHGKNSSTATNNTATASKRLRLFGVNMECASSSSPSVVEESRCCNVTAMANPSISSSSSSIIPPPLHQYLRVPHEDRISSSSSAALLSSARFQSSHHHQKGETSMPFDLDPSLHYRQ 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1779 509 Coils Coil 1 36 - -
Acco09g1779 509 MobiDBLite consensus disorder prediction 81 107 - -
Acco09g1779 509 MobiDBLite consensus disorder prediction 72 109 - -
Acco09g1779 509 MobiDBLite consensus disorder prediction 123 143 - -
Acco09g1779 509 MobiDBLite consensus disorder prediction 14 33 - -
Acco09g1779 509 MobiDBLite consensus disorder prediction 36 56 - -
Acco09g1779 509 MobiDBLite consensus disorder prediction 1 56 - -
Acco09g1779 509 CDD B3_DNA 156 245 IPR003340 GO:0003677
Acco09g1779 509 MobiDBLite consensus disorder prediction 481 509 - -
Acco09g1779 509 SMART B3_2 158 263 IPR003340 GO:0003677
Acco09g1779 509 Gene3D - 151 268 IPR015300 -
Acco09g1779 509 FunFam B3 domain-containing protein 151 269 - -
Acco09g1779 509 ProSiteProfiles B3 DNA-binding domain profile. 158 261 IPR003340 GO:0003677
Acco09g1779 509 SUPERFAMILY DNA-binding pseudobarrel domain 155 256 IPR015300 -
Acco09g1779 509 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 19 433 IPR044800 GO:0003700
Acco09g1779 509 Pfam B3 DNA binding domain 158 262 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1779 Acco-ChrAcco09 34483335 34484864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1779 153 424 RAV Transcription Factor Family AT2G46870 50.704 2.00e-71 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Acco09g1779 B3 2.3e-28 CL0405