Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1737 ATGCAGGGAGCTGAATCGTCAGGTTCTTCCGCTGGCAACGTCTTCGTTGATGAATTCTACTTCTCAGCTCTTTTTGATGAAGATGAAATCTTTCCAATTTCCAATGAAAAATATGCAGAACAGATTCAGCTGCAAGAAGCCCTCATGTCCTCTGTAATTATAATGTCCAGGACATTCAGATGCGATAACGAGGATCAGATTAACGATATGAATGTCGAAGATTCTTCCAGAAAGGGAAAAGGCAAGTTTATAGAGACCGGTGAATCTTCTAGAAGCTCCAGCAATAATATCATGAGCTTCTGTCAGATTTGCATGGAAGACAAACCTACGGAAAACATGTTTAGAGATAATAACAGCTGTGAACATGTTTTCTGTTCGAACTGCATGGCATCCTACGTGGCATCGAAGCTTCAAGAGAACATATCAATGGTGAAATGTCCCGACCCGAAATGCAGAGGAATCATCGAGCCACTCTTTTGTGGATCCATAATTCCAGAGGAGTTATTTGAGAGGTGGGAAAATGCAGTGTGTGAGAATTTGATCTTGGGGTCTCAGAAATTTTATTGTCCCTTTAAGGATTGCTCGGCCATGATGGTGGACGACGGCGACGAGGTGGTGACATCCTCGGAGTGCCCCAATTGCAGGAGGCTGTTCTGTGCTCAGTGCAAGGTGACGTGGCACGCCGGGATGGATTGTGCAGGTTTTCAGATCAGCCAGAAATTGGACCAGACACAAAACGATGATCTGTTGAAGGAACTAGCAAAGAACAAGAAATGGAGAAGATGCCCTCGATGCAGATTCTTCGTCGGGAAGATGGATGGATGCTCTCATATATCCTGCAGGTGTGGAAATCAGTTTTGTTATGGATGCGGATCTGATTGGAATTTGCATCATGGGTGTCGTTTGTAG 909 0.4444 MQGAESSGSSAGNVFVDEFYFSALFDEDEIFPISNEKYAEQIQLQEALMSSVIIMSRTFRCDNEDQINDMNVEDSSRKGKGKFIETGESSRSSSNNIMSFCQICMEDKPTENMFRDNNSCEHVFCSNCMASYVASKLQENISMVKCPDPKCRGIIEPLFCGSIIPEELFERWENAVCENLILGSQKFYCPFKDCSAMMVDDGDEVVTSSECPNCRRLFCAQCKVTWHAGMDCAGFQISQKLDQTQNDDLLKELAKNKKWRRCPRCRFFVGKMDGCSHISCRCGNQFCYGCGSDWNLHHGCRL 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1737 302 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 70 298 IPR031127 GO:0004842|GO:0016567
Acco09g1737 302 SMART ibrneu5 239 300 IPR002867 GO:0008270
Acco09g1737 302 SMART ibrneu5 170 232 IPR002867 GO:0008270
Acco09g1737 302 MobiDBLite consensus disorder prediction 71 91 - -
Acco09g1737 302 CDD Rcat_RBR_unk 258 294 - -
Acco09g1737 302 Gene3D - 230 301 - -
Acco09g1737 302 SUPERFAMILY RING/U-box 243 300 - -
Acco09g1737 302 FunFam RBR-type E3 ubiquitin transferase 96 183 - -
Acco09g1737 302 ProSiteProfiles TRIAD supradomain profile. 97 302 IPR044066 -
Acco09g1737 302 CDD BRcat_RBR_unk 183 235 - -
Acco09g1737 302 MobiDBLite consensus disorder prediction 71 85 - -
Acco09g1737 302 ProSiteProfiles Zinc finger RING-type profile. 101 150 IPR001841 -
Acco09g1737 302 Pfam IBR domain, a half RING-finger domain 171 232 IPR002867 GO:0008270
Acco09g1737 302 Pfam IBR domain, a half RING-finger domain 250 300 IPR002867 GO:0008270
Acco09g1737 302 ProSitePatterns Zinc finger RING-type signature. 120 129 IPR017907 -
Acco09g1737 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 184 IPR013083 -
Acco09g1737 302 SUPERFAMILY RING/U-box 180 235 - -
Acco09g1737 302 SUPERFAMILY RING/U-box 99 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1737 Acco-ChrAcco09 34091142 34092331 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1737 101 299 C3H Transcription Factor Family AT2G31770 27.184 6.11e-18 82.0