Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1713 ATGCAGAATCACAGGCTGAAGCAGCAGCAACAAGCTTTGATGCAGCAAGCTCTTCTTCAGCAACAGTCTCTGTACCACCCTGGCCTCCTAGCTCCTCCCCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTTGGGAACATACATACACAGGTAACTGAACCACTGCTGCAAGAAGTTTTTGCAAGTACTGGCCCAGTTGAAGGTTGTAAACTTATCAAAAAGGAGAAGTCATCCTATGGATTCATTCATTACTTTGATCGAAGATCAGCTGCTCTTGCCATTTTATCTCTCAATGGAAGGCACTTATTTGGACAGCCCATCAAAGTTAACTGGGCATATGCTAGCGGTCAGAGAGAGGATACATCAGGTCATTACAACATATTTGTAGGTGATCTCAGCCCTGAGGTCACTGATGCTACATTGTTTGCTTGCTTTTCTGTTTACCCCAGTTGTTCAGATGCAAGGGTAATGTGGGATCAGAAGACTGGGCGCTCCAGAGGGTTTGGTTTTGTTTCATTTCGCAATCAACATGATGCTCAAAGCGCAATAAATGATTTGTCTGGTAAGTGGCTTGGTAGTAGACAAATACGCTGCAACTGGGCAACAAAAGGTGCTGGTTCTAATGAAGACAAGCAAAACTCTGACACAAAAAGTGTGGTTGAACTAACAAATGGCTCATCTGAAGATGGTAAAGAGACAACTAACAGCGACGCTCCCGAGAACAATCCTCAATACACTACTGTCTATGTGGGCAATCTTGCTCCAGAGCTTACTCAGCTTGATCTCCATCGCCACTTCCATGCTCTTGGGGCTGGAGTGATAGAGGAGGTTCGTGTCCAGCGGGATAAAGGGTTTGGTTTTGTGAGGTATAGTACTCATGCTGAAGCAGCTCTGGCTATTCAGATGGGAAATGCCCAGTCTATTCTCTGCGGAAAACCAATTAAGTGCTCCTGGGGTAGCAAGCCCACTCCTCCGGGAACTGCTTCAAACCCTCTACCCCCACCTGCCGCACCTCTGCCAGGCCTCTCTGCAACTGATCTTCTGGCATATGAGAGACAGTTAGCGATGAGCAAGATGGGAGGTGTACACGCCCTTATGCATCCCCAAGGACAGCACCCACTTAAACAGGCTGCAATTGGAGGAAGTCAGGCAATATATGATGGTGGGTTTCAGAATGTTGCTGCTGCCCAACAAATGATGTATTACCAGTAA 1251 0.4676 MQNHRLKQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFASTGPVEGCKLIKKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQHDAQSAINDLSGKWLGSRQIRCNWATKGAGSNEDKQNSDTKSVVELTNGSSEDGKETTNSDAPENNPQYTTVYVGNLAPELTQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSILCGKPIKCSWGSKPTPPGTASNPLPPPAAPLPGLSATDLLAYERQLAMSKMGGVHALMHPQGQHPLKQAAIGGSQAIYDGGFQNVAAAQQMMYYQ 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1713 416 SUPERFAMILY RNA-binding domain, RBD 250 341 IPR035979 GO:0003676
Acco09g1713 416 SMART rrm1_1 260 330 IPR000504 GO:0003723
Acco09g1713 416 SMART rrm1_1 54 123 IPR000504 GO:0003723
Acco09g1713 416 SMART rrm1_1 139 212 IPR000504 GO:0003723
Acco09g1713 416 FunFam Oligouridylate-binding protein 1C 236 338 - -
Acco09g1713 416 CDD RRM2_PUB1 137 216 - -
Acco09g1713 416 Gene3D - 239 338 IPR012677 -
Acco09g1713 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Acco09g1713 416 Gene3D - 135 238 IPR012677 -
Acco09g1713 416 Gene3D - 1 134 IPR012677 -
Acco09g1713 416 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 51 337 - -
Acco09g1713 416 FunFam oligouridylate-binding protein 1-like isoform X2 136 231 - -
Acco09g1713 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 121 IPR000504 GO:0003723
Acco09g1713 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 261 324 IPR000504 GO:0003723
Acco09g1713 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 210 IPR000504 GO:0003723
Acco09g1713 416 SUPERFAMILY RNA-binding domain, RBD 37 131 IPR035979 GO:0003676
Acco09g1713 416 CDD RRM1_PUB1 55 125 - -
Acco09g1713 416 MobiDBLite consensus disorder prediction 215 258 - -
Acco09g1713 416 SUPERFAMILY RNA-binding domain, RBD 132 220 IPR035979 GO:0003676
Acco09g1713 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 127 IPR000504 GO:0003723
Acco09g1713 416 SMART rrm2_1 139 212 IPR003954 GO:0003676
Acco09g1713 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 259 334 IPR000504 GO:0003723
Acco09g1713 416 FunFam oligouridylate-binding protein 1B-like isoform X2 1 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1713 Acco-ChrAcco09 33791449 33796416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1713 54 328 Eukaryotic Initiation Factors Gene Family AT3G16380 25.685 1.28e-16 80.1