LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco09g1685	ATGCCTCCTTCCAGAAGATTTCACCTGAAAAGCTTCGTTCTTGGCTGTTTCAAAGCCTATCAATCTTCTTCAACCTTATGCTCTGCGACTAAAAATCACAATCATCGTCGTCATCATAAGAACAATAAGTGCTTAGCCTCCAGTAAGGTTAGCTCAAGAAGATTGTGTCTTTCTGATATGAGCAATTCTTCTTCTCTTTCTATCATGAGTGATCTTTCAAACTCTGTTCTGGGTTCAAATCTTCATATCTTCACCCTCAAAGAGCTCAAAGAGATTACCCAAAATTTCTGCAAATCCAGTGTTGTTGGTGAAGGTGGGTTTGGTAAGGTTTATAAAGGCTTCATTGATGATAAGCTTAGGCCTGGTTTAGAAGCTCAAGTTGTTGCAGTTAAGGTTCTTGATTCAGATAGCAAACAGGGACACAGAGAGTGGTTGGCTGAAGTAATATTTTTGGGGCAACTGAAGCATCCTCATCTGGTGAACTTGATTGGATATTGCTGTGAAGATGAACACAGACTTTTGGTTTACGAATACATGGAGAGAGGCAATTTAGAGACCAAGCTTTTCAAAGGTTACTTAGCAGCCTTGCCTTGGCTCACAAGAATCAAAATTGCCATTGGGGCTGCAAAAGGACTTGCTTTCCTTCATGAAGAAGACCAACCTGTCATCTACAGAGACGTCAAAGCCTCAAACATCTTATTAGATGCAGATTACAATGCCAAGCTCTCTGATTTCGGTCTCGCCATAGATGGCCCAGAAGAAAACCAAATTCATATCACAACCAGTGTTATGGGTACTCATGGTTATGCTGCTCCTGAGTACATCACATCTGGGCATTTGACAACCATGAGCGATGTGTATAGCTTTGGGGTGGTTCTGTTAGAGCTGATCACAGGGAAGAGATCAGTGGATAAGAACCGTCCGATCAGAGAACAGGATTTGGTGGAATGGGCAAGACCATTGTTAAAGGACCCTAATAAGCTTGAAAGAATAATGGACCCAAGACTAGAAGGTCGACACTCCTACGAAGGGGCTAGAAAAATGGCGTATTTGGCACACCAATGTCTGAGTCAACAACCCAAATCTAGACCTTCCATGCGGGCCGTGGTTAAGACCTTAGAGCCACTTATGAACTTGACTGATATAATTGGCTACTTTGTCTATGTGGTCCCATGTGAAGAAAATAAAGTAGTTCAATGTGGGGATGAGTGTGAACAGAAGAAGGAGGAGGAGAAGATGGAGAAGAAGACGATGACGACGACAGCTACGACGAAGAAGAAGGCTACGGAGGGAGTTCAGAGGAATCGAAAGATTCAAAGACGAAAACGTCAGATTAAGCTGCTGAGATCATCTGGTTCTGTTCATTCAGACACTGCTCTGTACAAAGTGCTTGGTTCTAGTCTTTATTCTTCAAAGCAAGCACCATAA	1428	0.4258	MPPSRRFHLKSFVLGCFKAYQSSSTLCSATKNHNHRRHHKNNKCLASSKVSSRRLCLSDMSNSSSLSIMSDLSNSVLGSNLHIFTLKELKEITQNFCKSSVVGEGGFGKVYKGFIDDKLRPGLEAQVVAVKVLDSDSKQGHREWLAEVIFLGQLKHPHLVNLIGYCCEDEHRLLVYEYMERGNLETKLFKGYLAALPWLTRIKIAIGAAKGLAFLHEEDQPVIYRDVKASNILLDADYNAKLSDFGLAIDGPEENQIHITTSVMGTHGYAAPEYITSGHLTTMSDVYSFGVVLLELITGKRSVDKNRPIREQDLVEWARPLLKDPNKLERIMDPRLEGRHSYEGARKMAYLAHQCLSQQPKSRPSMRAVVKTLEPLMNLTDIIGYFVYVVPCEENKVVQCGDECEQKKEEEKMEKKTMTTTATTKKKATEGVQRNRKIQRRKRQIKLLRSSGSVHSDTALYKVLGSSLYSSKQAP	475

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco09g1685	475	Gene3D	Transferase(Phosphotransferase) domain 1	179	383	-	-
	Acco09g1685	475	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	222	234	IPR008271	GO:0004672\|GO:0006468
	Acco09g1685	475	ProSiteProfiles	Protein kinase domain profile.	96	377	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco09g1685	475	Pfam	Protein tyrosine and serine/threonine kinase	100	373	IPR001245	GO:0004672\|GO:0006468
	Acco09g1685	475	FunFam	protein STRUBBELIG-RECEPTOR FAMILY 8	179	382	-	-
	Acco09g1685	475	SUPERFAMILY	Protein kinase-like (PK-like)	71	374	IPR011009	-
	Acco09g1685	475	SMART	serkin_6	96	377	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco09g1685	475	FunFam	Serine/threonine-protein kinase BIK1	63	178	-	-
	Acco09g1685	475	CDD	STKc_IRAK	102	376	-	-
	Acco09g1685	475	ProSitePatterns	Protein kinases ATP-binding region signature.	102	131	IPR017441	GO:0005524
	Acco09g1685	475	PANTHER	OS01G0588500 PROTEIN-RELATED	48	376	-	-
	Acco09g1685	475	MobiDBLite	consensus disorder prediction	415	453	-	-
	Acco09g1685	475	Gene3D	Phosphorylase Kinase; domain 1	58	178	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco09g1685	Acco-ChrAcco09	33279559	33281403	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco09g1685	82	373	Glycoside Hydrolase	AT3G07070	50.847	3.37e-98	300

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Acco09g1685		PK_Tyr_Ser-Thr	5.9e-48	CL0016