Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1668 ATGACCTCTCATGAACAAGCCCTAGTTTCCCTTTTTTCCCAGCTAGCCTTGTCCTTCGACGGTGCCGTTTTGGGTCTCGCCTTGGCCTATACCGCTGTCCGGTCCGTCCTCAAACTTACTGCGAACTCCGCCGCGCTTGACAAGCTTCGCATCGCCCCTACTCTCTCCGTTTCTGACCTCCGATCACTTCTGGACAGTTCCGACTCTGACGGTAATTCCCAAAACAAACTCGTTATTGTCCGTGGCACTGTCGAGGCCAAGTCTGCCGTTGAGAGCGGCTGGAAAAGTTTAAGACCTGGTGTGTTAGTTTCTAACGAGTCAGGCGATAGCGCTGTGGCTATTGAGAGAAGTCAAACGTGTATATATACTGAATGGAAGGGCTTCTTTGGTTGGACTTCTGATATTCGTGCCTTATTTGTCAGAAATTTGAGGCAGCAAGAGTCTTCATCTTTAAGAACGGTACCTTTTGTTCTCATTGATGGGGGACGACGATCTAATGCTGATTATGCTATTGTCAACTTAGAAGGCTCAAGACATCCCTTACCTCTTACTACAGTTTATCATAAATTGCAACCCACAAATGCTTGTCCTTACACATTCTTGCAGGCACTCTTTGGAAATCAGTATCCGGTTGGGATACTGGATGAAGAGAAAATTCTTCCTTTGGGAAAGGATGTCTATGCTGTTGGCATATGCTATCATCGAAATGGAATTGCTGAAATTAAGTCATGCAAAGAGTTGCCATATTTTCTGTCTGAATTGAACAAAGATCAGATGATTGTTGAGCTCACATTTAAAACAAAGGTACTCTTTTGGAGTGGTATCATTCTCGGTTCACTGTCAGTTGGGATTCTTGGTTATGCTTTTATGAGAAACTGGAACAAGTGGAAACAATGGAGGCTACAGAGGGAGGCTCAACAGCAAAGGCAAGTCAACCATGATGATGCTGAATTTGAGAATTTAGAGAATGAGATGGACGATGTTCCAGATGGACAATTATGTGTTATATGCCTGATGAGGAGAAGGCGTTCTGTGTTTATTCCCTGCGGGCATCTTGTGTGTTGTCAAGGGTGTGCTGTATCAGTTGAACGTAATGTGGCACCCAAGTGTCCTGTTTGTCGGCAGGAAATTCGCAATTCAGTGCGGATATTTGAATCATGA 1161 0.4462 MTSHEQALVSLFSQLALSFDGAVLGLALAYTAVRSVLKLTANSAALDKLRIAPTLSVSDLRSLLDSSDSDGNSQNKLVIVRGTVEAKSAVESGWKSLRPGVLVSNESGDSAVAIERSQTCIYTEWKGFFGWTSDIRALFVRNLRQQESSSLRTVPFVLIDGGRRSNADYAIVNLEGSRHPLPLTTVYHKLQPTNACPYTFLQALFGNQYPVGILDEEKILPLGKDVYAVGICYHRNGIAEIKSCKELPYFLSELNKDQMIVELTFKTKVLFWSGIILGSLSVGILGYAFMRNWNKWKQWRLQREAQQQRQVNHDDAEFENLENEMDDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAVSVERNVAPKCPVCRQEIRNSVRIFES 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1668 386 Coils Coil 304 324 - -
Acco09g1668 386 ProSiteProfiles Zinc finger RING-type profile. 334 374 IPR001841 -
Acco09g1668 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 386 IPR044247 GO:0004842
Acco09g1668 386 SMART ring_2 334 373 IPR001841 -
Acco09g1668 386 CDD RING-HC_SPL2-like 329 375 - -
Acco09g1668 386 Pfam Zinc finger, C3HC4 type (RING finger) 332 379 - -
Acco09g1668 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 308 385 IPR013083 -
Acco09g1668 386 Pfam E3 Ubiquitin ligase 140 284 IPR022170 GO:0004842|GO:0006996|GO:0016567
Acco09g1668 386 SUPERFAMILY RING/U-box 333 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1668 Acco-ChrAcco09 33077419 33080640 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1668 325 383 C3H Transcription Factor Family AT3G06140 37.288 8.01e-07 48.9