Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1647 ATGCACAGGTATGCTACATGGAATTTCCAGTCTCATGTTATTTTGAAGGTACAGAGAATTGCTATTTTAAAAGGTAAGAAATCATCTGCCTCCAGGATTTTAAGCTTGAAAATGGGAGTTCTGCCGCAACAACGTCATAATACAAAGCCATTGAGTTTTCAGTTTCATGATCAAGATTCATCTTCTACTCAATCGACTGATCAATCTTATCCAGAAGTTGGTTCAGCTCAATCAGGTCAAGTTTCTATCCAGTGTAGCAAGTCCTCTTCACATTCAAAATGTAGTGCAAGTGGAGGAGGTCTCATCAGGTCATCACTGGGGAGTCAGAGTTTTTGTTTTCCTCCTTTCCAAGTGGATCATAACCAACCAATTTCTCATATCGCATTTCACCATGCTGAACCATGCTTTGATGGTGTATTTGCTGCATTCGGGCCACAATCTAAGATTCATCAGGCCCAACTCATGGGATTAACTTCTGTTCGAGTTCCTCTTCCTTTTGATCTGACCGAAGAACCGATATACGTCAATGCAAAGCAGTACCATGCTATTTTGAGGCGTAGACAGTTTCGTGCCAAACTCGAAGCACAGAACAGACTCATCAAAGCTCGAAAACCATATCTTCACGAGTCCCGGCATCTGCACGCATTAAGGAGGGCTAGAGGTTCTGGCGGTCGCTTTCTCAACAGCAAGCAACTCCAGGAAGCAAACCTGAAAACAGACAGTCACAGTGACCTGAAAGTTTCGGAAGGTACTAGGTTGAACCTAGGTCATGGAAACATGTCAGAAACCAAGAATCATGCTGATGCAGAAAACTACAGAAATGGGCCATGCCCAACAGGTTCTGATATCACAAGTGCATCCAATAATAGTGATGGCATGCTCCAGCAACATGAGTTCAGCTTCAGGCTCTCTAGTTACCCTCCTCACAACTTTGGATGGAACATGCAAGGCTACTCGGCTGATCCCAGCGCTCGCGGTGGTGGGAATCAACAGCGCGTGTCTGTTCTGATGTGA 1014 0.4458 MHRYATWNFQSHVILKVQRIAILKGKKSSASRILSLKMGVLPQQRHNTKPLSFQFHDQDSSSTQSTDQSYPEVGSAQSGQVSIQCSKSSSHSKCSASGGGLIRSSLGSQSFCFPPFQVDHNQPISHIAFHHAEPCFDGVFAAFGPQSKIHQAQLMGLTSVRVPLPFDLTEEPIYVNAKQYHAILRRRQFRAKLEAQNRLIKARKPYLHESRHLHALRRARGSGGRFLNSKQLQEANLKTDSHSDLKVSEGTRLNLGHGNMSETKNHADAENYRNGPCPTGSDITSASNNSDGMLQQHEFSFRLSSYPPHNFGWNMQGYSADPSARGGGNQQRVSVLM 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1647 337 PRINTS CCAAT-binding transcription factor subunit B signature 203 226 IPR001289 GO:0003700|GO:0006355
Acco09g1647 337 PRINTS CCAAT-binding transcription factor subunit B signature 172 194 IPR001289 GO:0003700|GO:0006355
Acco09g1647 337 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 43 293 IPR001289 GO:0003700|GO:0006355
Acco09g1647 337 SMART cbf3 168 229 IPR001289 GO:0003700|GO:0006355
Acco09g1647 337 MobiDBLite consensus disorder prediction 53 74 - -
Acco09g1647 337 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 171 226 IPR001289 GO:0003700|GO:0006355
Acco09g1647 337 Gene3D - 169 230 - -
Acco09g1647 337 ProSiteProfiles NF-YA/HAP2 family profile. 169 229 IPR001289 GO:0003700|GO:0006355
Acco09g1647 337 ProSitePatterns NF-YA/HAP2 subunit signature. 174 194 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1647 Acco-ChrAcco09 32853731 32857582 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1647 23 288 CCAAT-HAP2 Transcription Factor Family AT1G17590 45.221 2.10e-48 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Acco09g1647 CBFB_NFYA 2.9e-26 No_clan