Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1646 ATGACACCTTTATTTGCTCCTGCTTCTCTGATATCTCATTTTTCACTGTCGGAGATAGGAAGGAGAGTGAGACGGAGAGACGAAGTCATGGATGGTGGAGCGCAGTACAATCCTCGCACGGTGGAAGAGGTTTTTAGGGATTTCAAGGGAAGACGAGCCGGACTTATAAAAGCCCTTACCACCGATGTTGAAGAATTCTACAACCAATGTGATCCTGAGAAGGAGAATTTGTGCTTGTATGGTTATCCTAGTGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAAGTTCCTCCAGAACTTCCGGAGCCTGTGCTGGGCATAAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGTTATCTTTAGTTGCTGTCCATAGTGATTCATGGTTACTTGCTATCTCTTTCTACTTTGGAGCCAGATTTGGGTTTGATAGAGCTGACAGGAAACGACTTTTCAATATGATTAATGAACTGCCAACGATATTTGAAGTTGTTACGGGTACAGCAAAGAAACAACTTCAGGAGAAGTCTTCAGGTTCAAATCACGGTGGCAATAAATCAAAGTCTAACTCTAAAGCGCGAGGTTCAGAATCTGTGGGAAAGCATTCAAAGGCTATGGAAACAAGAGACGAGGAAGAAGAACTGGATGAAGTAGATGAAGAAGATGAACATGGAGAGACTTTGTGCGGGGCATGTGGTGAGAATTATGGTACTGATGAATTCTGGATTTGTTGCGACATCTGCGAAAAATGGTTCCATGGAAAATGTGTGAAGATCACCCCAGCTAGGGCAGAGCATATCAAACAATACAAATGCCCAACATGCAGTAACAAGAGGACTCGTCCCTGA 852 0.4354 MTPLFAPASLISHFSLSEIGRRVRRRDEVMDGGAQYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYNQCDPEKENLCLYGYPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDSWLLAISFYFGARFGFDRADRKRLFNMINELPTIFEVVTGTAKKQLQEKSSGSNHGGNKSKSNSKARGSESVGKHSKAMETRDEEEELDEVDEEDEHGETLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPTCSNKRTRP 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1646 283 CDD PHD_AL_plant 229 279 IPR044104 -
Acco09g1646 283 FunFam PHD finger alfin-like protein 222 278 - -
Acco09g1646 283 MobiDBLite consensus disorder prediction 173 223 - -
Acco09g1646 283 SUPERFAMILY FYVE/PHD zinc finger 220 280 IPR011011 -
Acco09g1646 283 Pfam Alfin 40 168 IPR021998 GO:0006355|GO:0042393
Acco09g1646 283 MobiDBLite consensus disorder prediction 196 210 - -
Acco09g1646 283 MobiDBLite consensus disorder prediction 173 195 - -
Acco09g1646 283 SMART PHD_3 229 277 IPR001965 -
Acco09g1646 283 Pfam PHD-finger 230 279 IPR019787 -
Acco09g1646 283 ProSitePatterns Zinc finger PHD-type signature. 230 276 IPR019786 -
Acco09g1646 283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 220 278 IPR013083 -
Acco09g1646 283 PANTHER CPG BINDING PROTEIN 37 282 IPR045104 GO:0006355|GO:0042393
Acco09g1646 283 ProSiteProfiles Zinc finger PHD-type profile. 227 279 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1646 Acco-ChrAcco09 32848215 32853426 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1646 30 282 Alfin-like Transcription Factor Family AT3G42790 74.803 3.15e-126 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Acco09g1646 Alfin 5.6e-69 No_clan