Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1630 ATGCATCATCTCAATCCTCTCCTACTCGCTCTATCTGTTGTCTCAAGTCACAAATCGCCTCATTCTTACTCTGTTTATTTTCAAATCTCTCTTCTTTGCTCATCTTTTGTGTCTCTATCTCTGCTTTACTATCAAGCATTCAACACTCTTCCAGTTATGGCAGGTTTGGCTCCAGAAGGGACTCAATTTGACACTCGTCAATATGATGCCAAAATGAATGAATTGCTTTCCGCTGATGGACAAGAATTTTTTACCTCCTATGATGAGGTTTATGATACTTTTGATGCAATGGGATTACAAGAAAATCTTTTGAGAGGCATCTATGCTTATGGTTTTGAGAGGCCTTCTGCTATCCAACAGAGGGGAATTGTTCCTTTTTGCAAGGGTCTTGATGTCATTCAACAGGCCCAGTCTGGAACAGGCAAGACGGCAACATTCTGCTCAGGAATTTTGCAGCAACTTGATTATGGTTTAGTTCAGTGCCAGGCTTTGGTATTGGCACCAACAAGGGAGCTTGCCCAGCAGATTGAGAAGGTTATGCGAGCTCTTGGTGATTACCTTGGTGTTAAGGTTCATGCTTGTGTAGGCGGCACAAGTGTTCGTGATGATCAGCGCATTCTCCAAGCTGGTGTTCATGTTGTTGTTGGAACTCCTGGTCGTGTGTTTGACATGCTCCGCCGGCAGTCTCTTCGTCCAGATTACATAAAGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCCCGAGGTTTCAAGGACCAGATCTATGACATTTTCCAGATGCTGCCAGGTAAAATTCAGGTGGGAGTCTTCTCTGCCACAATGCCTCCAGAGGCTCTTGATATTACCAGGAAGTTTATGAATAAGCCTGTGAGAATCTTGGTAAAGCGAGATGAACTGACCCTTGAAGGTATCAAGCAATTTTATGTCAATGTTGATAAGGAGGAGTGGAAACTAGAGACACTCTGTGATCTTTATGAAACCCTGGCCATCACCCAGAGTGTCATTTTTGTCAACACAAGGCGCAAGGTGGACTGGCTCACTGATAAGATGCGCAGCAATGACCATACAGTGTCGGCAACCCATGGCGACATGGACCAGAACACTCGTGATATTATTATGCGTGAATTTCGATCTGGTTCTTCTAGAGTTCTGATCACTACTGATCTCTTGGCTCGCGGTATTGATGTGCAGCAAGTCTCTCTTGTCATCAACTATGATCTGCCAACCCAGCCTGAAAATTATCTTCATCGAATCGGTCGAAGTGGACGATTCGGAAGGAAAGGTGTGGCTATAAATTTTGTGACAATGGATGATGCTAGAATGCTGTCTGACATTCAGAAGTTCTATAACGTTTCCATAGAGGAGTTGCCATCAAATGTTGCAGATCTGCTCTGA 1398 0.4385 MHHLNPLLLALSVVSSHKSPHSYSVYFQISLLCSSFVSLSLLYYQAFNTLPVMAGLAPEGTQFDTRQYDAKMNELLSADGQEFFTSYDEVYDTFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRDDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQMLPGKIQVGVFSATMPPEALDITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTMDDARMLSDIQKFYNVSIEELPSNVADLL 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1630 465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 446 IPR027417 -
Acco09g1630 465 SMART ultradead3 111 308 IPR014001 -
Acco09g1630 465 Pfam DEAD/DEAH box helicase 117 278 IPR011545 GO:0003676|GO:0005524
Acco09g1630 465 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 90 449 - -
Acco09g1630 465 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 239 247 IPR000629 -
Acco09g1630 465 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 304 465 IPR001650 -
Acco09g1630 465 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 92 120 IPR014014 GO:0003724
Acco09g1630 465 CDD DEADc_EIF4A 96 294 - -
Acco09g1630 465 Gene3D - 82 300 IPR027417 -
Acco09g1630 465 SMART helicmild6 345 426 IPR001650 -
Acco09g1630 465 Pfam Helicase conserved C-terminal domain 318 426 IPR001650 -
Acco09g1630 465 CDD SF2_C_DEAD 305 435 - -
Acco09g1630 465 FunFam Eukaryotic initiation factor 4A-II 80 299 - -
Acco09g1630 465 FunFam Eukaryotic initiation factor 4A-III 300 465 - -
Acco09g1630 465 Gene3D - 301 465 IPR027417 -
Acco09g1630 465 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 123 293 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1630 Acco-ChrAcco09 32652462 32656706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1630 53 465 Eukaryotic Initiation Factors Gene Family AT1G72730 88.164 0.0 767