Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1597 ATGATGAAGGGTTTGATGTTTCAGCAACAAGAAGTAGTAGTAGAAGAGAACATGCCTAATTTGACTTCTGCATCTGGTGAGGCCAGTGTTTCCTCAGGCAATAGAAATGAAATTGGTACCAATTATCCTCCACAACAACAATACTTTGCTTCACCATCATCAACTCATCAAACAATTCAGCCTCCGAAGAAAAGGAGAAACCTTCCTGGCAATCCAGACCCAGATGCTGAAGTTATAGCCTTGTCTCCCAAGAGTCTTTTGGCAACAAATAGGTTTATCTGTGAGATCTGCAACAAAGGGTTTCAGAGAGACCAGAATCTTCAGCTTCATAGAAGAGGGCACAATCTGCCATGGAAGCTGAAGCAGAGAACTAACAAAGAAGTGAGGAAGAAGGTGTATGTGTGCCCAGAACCAACTTGTGTGCACCATGACCCAGCAAGAGCACTTGGGGACCTAACTGGGATAAAGAAGCATTTCTGCAGAAAACATGGTGAGAAGAAGTGGAAATGTGATAAGTGCTCTAAGAGGTATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAGACTTGTGGTAAAAGAGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACACATAGAGCCTTCTGTGACGCATTAGCAGAAGAGAGTGCAAGAACAAACCCACTTCTTCATCATCCTCAGCCACCTTCCATTATAAGTTCTTCATCTTCAGCACCATCTCACATTCTGAATCTCCAAACCCACCAAGATCTCCATTCTTTACAACTGAAGAAAGGGCATCATCATCATCAACAACAACAACGAAGCTTCAATCTTCCTCCATGGCTAGCTCCTGGGCCATCATCCACCATTAATGACCTCTCCTCACCACCACCATCATCTTCAATCTTCGATCAGGACTTTTCGCAAACATCTCACGGGCACCACCATGAAAACCCTAACCCTACTACTTCTTCTAGCCTGGGCCCCACCATCCTACTCCCTCCTCCTCCTGCCTACCAACCAGCGCCTTCCCCGCACATGTCAGCAACAGCCTTGTTGCAGAAAGCAGCACAAATGGGTTCAACCATCACCAAAACTGGCTCTGCCTCCTCCAATATGATTAGGACCCACCACCACACTCACGTGCCTCTTATTCCTCCTCCTTCACACTCTTCTGATCCTTCTGCCATCCATTCAAGTAGTGGTAATTTTGGTCTGAATTTGTCATCACGTGAATCTGCTGTTCTTCTCCCACCTCCTTCTGCTACTGCTCCTGCTTCTTCTTCCTTTCTTCTTCATCATGTTATGAGTTCTTTGTCTGGTACTTCTGGTGGTGGCGGGTTTGAAGGAACGTCTTTTGAGGATGCTTTTAGTGGGATTTTGAGCTCAAAGAATAGTAAAGATGGAAGCTTTCTTGATACCCTTACAAAGACAACCAACATCTCCGCCGGACATCTAAGTGGCGCCGTCGCCACCGGCAATGACGGTGGTGGGAATGAAGGTTTGACGAGAGATTTCTTGGGTCTTACACCTCTCTCTCATAATGAGATTCTCAGCTTTGCTGGAATTGAAAACTGCATGAACCCCACCTCCCTTGATCATCAGAAGCAATCCCAAAAACCTTGGCAAGGTTAG 1638 0.4579 MMKGLMFQQQEVVVEENMPNLTSASGEASVSSGNRNEIGTNYPPQQQYFASPSSTHQTIQPPKKRRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYVCPEPTCVHHDPARALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGKREYRCDCGTLFSRRDSFITHRAFCDALAEESARTNPLLHHPQPPSIISSSSSAPSHILNLQTHQDLHSLQLKKGHHHHQQQQRSFNLPPWLAPGPSSTINDLSSPPPSSSIFDQDFSQTSHGHHHENPNPTTSSSLGPTILLPPPPAYQPAPSPHMSATALLQKAAQMGSTITKTGSASSNMIRTHHHTHVPLIPPPSHSSDPSAIHSSSGNFGLNLSSRESAVLLPPPSATAPASSSFLLHHVMSSLSGTSGGGGFEGTSFEDAFSGILSSKNSKDGSFLDTLTKTTNISAGHLSGAVATGNDGGGNEGLTRDFLGLTPLSHNEILSFAGIENCMNPTSLDHQKQSQKPWQG 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1597 545 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Acco09g1597 545 Pfam Zinc-finger double-stranded RNA-binding 92 114 IPR022755 -
Acco09g1597 545 Gene3D Classic Zinc Finger 147 226 - -
Acco09g1597 545 FunFam protein indeterminate-domain 12-like 71 139 - -
Acco09g1597 545 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Acco09g1597 545 FunFam protein indeterminate-domain 5, chloroplastic-like 146 225 - -
Acco09g1597 545 SMART c2h2final6 92 114 IPR013087 -
Acco09g1597 545 SMART c2h2final6 133 163 IPR013087 -
Acco09g1597 545 SMART c2h2final6 168 188 IPR013087 -
Acco09g1597 545 MobiDBLite consensus disorder prediction 262 346 - -
Acco09g1597 545 Gene3D Classic Zinc Finger 73 139 - -
Acco09g1597 545 MobiDBLite consensus disorder prediction 19 77 - -
Acco09g1597 545 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 46 529 IPR031140 -
Acco09g1597 545 MobiDBLite consensus disorder prediction 273 330 - -
Acco09g1597 545 MobiDBLite consensus disorder prediction 19 64 - -
Acco09g1597 545 SUPERFAMILY beta-beta-alpha zinc fingers 91 188 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1597 Acco-ChrAcco09 32204125 32206517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1597 14 534 IDZ Gene Family AT1G55110 45.971 4.88e-131 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco09g1597 zf-C2H2_jaz 8.1e-05 CL0361