Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1576 ATGCATAGGGAGAGGGAGGGAGAGACTGTTGTAGTCGAGGTTTCGCTTTGTTCGCCCTTCCTTCCAACTGCTCCGGCACCTGCAACTTCTGCACATAGAATCGCCGCGAATTGCGTTCCTCATCAACGAATCATGAGTCGCTACGACAGTCGCTCTGGGGACCCTACTTCTTACCGTGACCGGAGAAGTGATTCGGGGCTGGGTGCTCCCACAGGTTACGGTGGTTCTGTCCACTCTTCCTCAAGCAGGAGGGATTACAATGATGGAGGATCCCCAAGGAAATTGAATTTGGATGGCCTGCCTCATTTTGAGAAGAATTTCTATGTTGAATCACCAGAGGTGAGGGCTATGACTGAGGATGAGGTTAATGAGTATCGGCAGAAGAGGGAGATAACTGTTGAAGGTCGAGATGTGCCAAAACCAGTCAAAAGCTTTCACCTTGCTGGTTTCCCAGAGTATGTTTTGCAAGAAATTACAAAAGCTGGTTTTGTTGAACCCACACCTATTCAATCTCAAGGTTGGCCAATGGCTTTGAAGGGGCGTGATCTCATTGGAATAGCTGAAACTGGATCAGGGAAGACACTTTCTTATCTATTGCCTGCAATCGTACATATTAATGCCCAGCCTATTCTAGAACCTGGAGATGGACCAATTGTGCTAATATTGGCTCCAACTCGTGAACTTGCTGTCCAAATACAACAAGAAGCTACTAAGTTTGGTGCATCATCTAGGATTAAGACTACGTGCATATATGGTGGGGTACCTAAGGGACCTCAGGTGCGGGATCTCCAGAAAGGTGTTGAAATTGTAATTGCTACTCCAGGAAGGTTGATTGACATGCTCGAATCGAATCATACAAACTTACGACGAGTTACATACCTTGTATTAGATGAGGCTGATAGGATGCTGGACATGGGCTTTGAGCCTCAGCTACGGAAGATTGTTGCCCAGATTCGACCTGACCGGCAAACGTTATGCTGGAGTGCTACCTGGCCAAAGGAGGTTGAGCAACTGGCGAGGCAGTCCCTTTATAACCCATACAAAGTGATTATAGGCTCTCCAGATTTAAAAGCTAACCATGCAATACGTCAAAATGTTGACATTGTTTCTGAGAAGCAGAAATATGAGAAATTGGTGAAGTTGCTGGAGGACATCATGGATGGCAGCCGAATACTGATATTCATGGATACTAAGAAAGGATGTGATCAGATCACTAGGCAGCTCCGCATGGATGGTTGGCCAGCACTTTCAATTCATGGAGATAAAAGTCAAGCAGAAAGAGATTGGGTGCTGTCAGAGTTCAGATCGGGAAAGAGTCCTATTATGACTGCAACAGATGTTGCAGCTCGTGGTTTAGATGTGAAAGATGTGATGTATGTAATAAATTACGACTTCCCAGGATCTCTTGAGGACTATGTTCATCGCATTGGTCGGACTGGGAGAGCTGGCGCAAAGGGAACTGCATATACATTCTTTACTGCTGCCAATGCTAGATTTGCAAAGGAACTTATAGGCATACTTGAGGAAGCTGGACAGAAAGTGAGTCCTGAATTGGCTGCAATGGCACGTGGTGCACCTCCTCCACCTTCAGGTTATGGAGGTTTCCGGGGGAGAGGTTATAGCAGTCGCCCGCTGAGATGA 1641 0.465 MHREREGETVVVEVSLCSPFLPTAPAPATSAHRIAANCVPHQRIMSRYDSRSGDPTSYRDRRSDSGLGAPTGYGGSVHSSSSRRDYNDGGSPRKLNLDGLPHFEKNFYVESPEVRAMTEDEVNEYRQKREITVEGRDVPKPVKSFHLAGFPEYVLQEITKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLSYLLPAIVHINAQPILEPGDGPIVLILAPTRELAVQIQQEATKFGASSRIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLRRVTYLVLDEADRMLDMGFEPQLRKIVAQIRPDRQTLCWSATWPKEVEQLARQSLYNPYKVIIGSPDLKANHAIRQNVDIVSEKQKYEKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVMYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIGILEEAGQKVSPELAAMARGAPPPPSGYGGFRGRGYSSRPLR 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1576 546 SMART helicmild6 402 483 IPR001650 -
Acco09g1576 546 FunFam ATP-dependent RNA helicase RhlB 353 525 - -
Acco09g1576 546 SMART ultradead3 162 365 IPR014001 -
Acco09g1576 546 Gene3D - 106 352 IPR027417 -
Acco09g1576 546 MobiDBLite consensus disorder prediction 520 546 - -
Acco09g1576 546 Pfam Helicase conserved C-terminal domain 374 483 IPR001650 -
Acco09g1576 546 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 143 171 IPR014014 GO:0003724
Acco09g1576 546 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 121 522 - -
Acco09g1576 546 Gene3D - 353 524 IPR027417 -
Acco09g1576 546 CDD SF2_C_DEAD 362 492 - -
Acco09g1576 546 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 295 303 IPR000629 -
Acco09g1576 546 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 377 522 IPR001650 -
Acco09g1576 546 FunFam probable ATP-dependent RNA helicase DDX17 105 352 - -
Acco09g1576 546 Pfam DEAD/DEAH box helicase 167 338 IPR011545 GO:0003676|GO:0005524
Acco09g1576 546 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 174 349 IPR014001 -
Acco09g1576 546 CDD DEADc_DDX5_DDX17 154 349 - -
Acco09g1576 546 MobiDBLite consensus disorder prediction 46 98 - -
Acco09g1576 546 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 498 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1576 Acco-ChrAcco09 31928327 31934781 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1576 130 503 Eukaryotic Initiation Factors Gene Family AT3G19760 33.867 1.48e-72 235