Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco09g1554 ATGCAAGACCCAAGGTTATTTCACTCAATGAAGAGCCAGGGATTTCCAGAACAACAAGAACTAGTCAAGTGCCCACGTTGTGATTCCACAAACACCAAGTTCTGCTACTACAACAATTACAATCTCTCACAGCCACGCCATTTCTGTAAGAGTTGCAGAAGGTACTGGACTAGAGGAGGCACTCTCCGCAACATCCCCGTCGGAGGTGGAAGCCGAAAAAACACACAGCGCTCATCGACCAGTACCAAACGCTTACTTGCAACTCCCTCTTCGTCACCATCTTCTCCGTCAGTTTCGTCGGCCATCGGAGGCGCAGACCCGACCCGTGTTTATACCGAGCCGATGAGTGGGAGTTTCAGTTCGCTTCTGGCATCATCATCATCATCTGGGCATCTGGGGAGTGTTTTGGAGGGTTTGAATCCAAATGGGTCGGGTGTGAAAATGGCGGAAGGCGGTGAATTTGGGGCGAATGTTAGTTCTGTTGAACGGGTTGTGGATCCGGGTTCGGAGATGCAGAGTAATGGTGATTCGAGCCGTTGGAATAGCGATAATGAGTGGTCTAACCTTGCGATGTATACACCAGGTTCGAGTTTTCAGTAG 600 0.5 MQDPRLFHSMKSQGFPEQQELVKCPRCDSTNTKFCYYNNYNLSQPRHFCKSCRRYWTRGGTLRNIPVGGGSRKNTQRSSTSTKRLLATPSSSPSSPSVSSAIGGADPTRVYTEPMSGSFSSLLASSSSSGHLGSVLEGLNPNGSGVKMAEGGEFGANVSSVERVVDPGSEMQSNGDSSRWNSDNEWSNLAMYTPGSSFQ 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco09g1554 199 MobiDBLite consensus disorder prediction 68 102 - -
Acco09g1554 199 Pfam Dof domain, zinc finger 20 76 IPR003851 GO:0003677|GO:0006355
Acco09g1554 199 MobiDBLite consensus disorder prediction 63 109 - -
Acco09g1554 199 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 150 IPR045174 GO:0003700|GO:0006355
Acco09g1554 199 ProSiteProfiles Zinc finger Dof-type profile. 22 76 IPR003851 GO:0003677|GO:0006355
Acco09g1554 199 MobiDBLite consensus disorder prediction 167 199 - -
Acco09g1554 199 ProSitePatterns Zinc finger Dof-type signature. 24 60 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco09g1554 Acco-ChrAcco09 31682458 31683057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco09g1554 15 191 C2C2-Dof Transcription Factor Family AT1G51700 45.550 1.06e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Acco09g1554 zf-Dof 1.8e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco09g1554 09 31682458 31683057 Acco07g0493 07 5944625 5945284 CCT
Acco09g1554 09 31682458 31683057 Acco09g1554 09 31682458 31683057 ECH